mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.6% | 54.2 / 31.8 | 57 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 43 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 568559 = | 3123 (57.480) | 61 (1.170) | 20/270 | 1.9 | 2.0% | coding (245/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568576 = | 2920 (56.130) | coding (262/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | 570695 = | 3651 (67.200) | 41 (0.790) | 19/268 | 2.1 | 1.2% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 3183 (61.640) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 568678 = | 3323 (61.160) | 28 (0.540) | 19/268 | 2.1 | 0.91% | intergenic (+31/‑17) | emrE/ylcJ | multidrug/betaine/choline efflux transporter EmrE/protein YlcJ |
| ? | NC_000913 | 568704 = | 2970 (57.520) | coding (10/150 nt) | ylcJ | protein YlcJ | |||||
| * | ? | NC_000913 | = 572325 | 2972 (54.700) | 19 (0.380) | 15/262 | 2.8 | 0.68% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 2753 (54.540) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 315852 | NA (NA) | 30 (0.570) | 12/274 | 3.8 | NA | noncoding (624/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315875 | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 570627 = | 3591 (66.090) | 12 (0.240) | 8/256 | 4.9 | 0.36% | intergenic (+199/‑266) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570677 = | 3332 (67.550) | intergenic (+249/‑216) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 568103 = | 2530 (46.560) | 11 (0.210) | 8/270 | 5.2 | 0.45% | pseudogene (69/213 nt) | renD | DLP12 prophage; protein RenD |
| ? | NC_000913 | 568127 = | 2452 (47.130) | pseudogene (93/213 nt) | renD | DLP12 prophage; protein RenD | |||||
| * | ? | NC_000913 | = 315651 | NA (NA) | 14 (0.270) | 7/266 | 5.5 | NA | noncoding (423/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315703 | NA (NA) | noncoding (475/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 4094338 = | NA (NA) | 18 (0.400) +23 bp |
5/236 | 5.8 | NA | noncoding (11/32 nt) | other | REP299a |
| ? | NC_000913 | = 4094682 | NA (NA) | intergenic (‑410/+41) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 6 (0.120) | 6/262 | 5.9 | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||