New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	576 (32.140)	200/262	NT	97.3%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	16 (0.890)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGA  >  NC_000913/566636‑566906                                                                                                                                              |                                                                                                                                  gAAGATCGCAGAAATTAAAGCTAAGTACGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCCATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGGAATCTg                                                                                                                                  >  2:357041/1‑143 (MQ=255)  aaGATCGCAGAAATTAAAGCTAAGATCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCCTAATCTgc                                                                                                                                 >  2:2438/1‑142 (MQ=255)         cAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc                                                                                                                          >  2:151622/1‑143 (MQ=255)          aGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGAGAGCGTAGTGTGAGCTTAccc                                                                                                                         >  2:170289/1‑143 (MQ=255)                          ttCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCACTAGTGGACAcg                                                                                                         >  1:111228/1‑143 (MQ=255)                                cTGAAAGGAGCAAGTGTATGACGAGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGAAATAGTGGACACGCGGATa                                                                                                   >  2:64764/1‑143 (MQ=255)                                       gAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAGCCGTAATCTGATCTCACCCCGCAATAGGGGACACGCGGCCACGTGact                                                                                            >  1:251516/1‑141 (MQ=255)                                                         cAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt                                                                          <  2:967/143‑1 (MQ=255)                                                                  aaTTATGCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTCATCTTTTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt                                                                 <  2:336304/143‑1 (MQ=255)                                                                      attCATTACCTGGGCACGCATAAGCGCCTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTcacttagcc                                                             <  2:54996/143‑7 (MQ=25)                                                                          aTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACCAACATGACaaaaa                                                         >  1:199209/1‑143 (MQ=255)                                                                                tGGGGACGCATAAGAGCATATGTGCACAGGACGTTGCCGCGGTAACAGGCACAACCGTAATCTGACCGTACACAGCAAAAGTAGACACACGGCTAAGAGAGTAAACTACCACTCAGAGGCTACTCAGATGAcaacaaaaacat                                                   >  2:38381/1‑137 (MQ=255)                                                                                   ggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATATGATGTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAACCTCTCAGTCAGAGGTGACTCACATGACCAAAACAGTATCaa                                                >  2:59023/1‑143 (MQ=255)                                                                                             gagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGTAACCGCAACCCCACCCCCCCCAGCAATAGTGGACACGCGGCTAAGTAAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGCaaaaa                                      >  1:152246/1‑143 (MQ=17)                                                                                                 ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATATTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAcccc                                  >  2:296361/1‑143 (MQ=255)                                                                                                 ctCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAccc                                  <  1:170289/142‑1 (MQ=255)                                                                                                     gtgCACAGGACGTTGCCGCGGTAACAGGAGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGCAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTa                              >  2:287825/1‑143 (MQ=255)                                                                                                       gCACAGGCCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa                            <  1:357041/143‑1 (MQ=255)                                                                                                                   gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTCAACAGCATTCGCCt                >  1:263311/1‑143 (MQ=255)                                                                                                                   gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGGAGAGAACCCCGTAAACAGCATTCGGCt                >  1:141272/1‑143 (MQ=255)                                                                                                                    ccGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTg               >  1:120099/1‑143 (MQ=255)                                                                                                                             cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa      <  1:151622/143‑1 (MQ=38)                                                                                                                                 cgcAACCTTAATCGGATCTTACGCAGACATAGTGGACACGTGAATAAGTGAATAAACTCTTAGTAAGATATATCTCACATGACAAAAACAGTATCAACCAGTAAAAGACCCCGTAATCAGCATTCGCCTGAATTTCGCAGTGa  <  2:125091/143‑1 (MQ=11)                                                                                                                                              |                                                                                                                                  GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGA  >  NC_000913/566636‑566906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.