New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1560959 =	14 (0.780)	3 (0.180)	3/242	NT	15.9%	coding (1523/1551 nt)	ddpA	putative D,D‑dipeptide ABC transporter periplasmic binding protein
	?	NC_000913	1561038 =	19 (1.150)					coding (1444/1551 nt)	ddpA	putative D,D‑dipeptide ABC transporter periplasmic binding protein

GCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGC  >  NC_000913/1560818‑1561096                                                                                                                                              |                                                                                                                                          tgccgggtaaccgctcgttctatgaaaacagtgaggtcgataagttactgcgcaatgcgcttgcgaccaccgaccagacgcagcgtacccgggactaccagcaggcacagaacatcgtcatcgatgacgctgcttctgtgtAc                                                                                                                                          <  1:189510‑M1/2‑1 (MQ=255) tgccgggtaaccgctcgttctatgaaaacagtgaggtcgataagttactgcgcaatgcgcttgcgaccaccgaccagacgcagcgtacccgggactaccagcaggcacagaaaatcgacattgctgacgctgattatgtgtAc                                                                                                                                          <  1:334195‑M1/2‑1 (MQ=255) tgccgggtaaccgctcgttctatgaaaacagtgaggtcgataagttactgcgcaatgcgcttgcgaccaccgaccagacgcagcggacccgggactaccagcaggcacagaaaatcgtcattgatgacgctgcttatgtgtAc                                                                                                                                          >  1:307796‑M1/142‑143 (MQ=255)        aTCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCACAGCAGCGATGGCGTCAAATACTCCAGAAGGTCACGTTACTTAATCAGCGTAATCATCTGGAAGACCTGTccc                                                                                                                                   >  2:775/1‑143 (MQ=255)         tCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCa                                                                                                                                  <  2:1731/143‑1 (MQ=255)                      gATGCGAGATAATCAACGTAATCACGCAGTCGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGaa                                                                                                                     <  1:260232/143‑1 (MQ=255)                      atgaaaacagtgaggtcgataagttactgcgcaatgcgcttgcgaccaccgaccagacgcagcgtacccgggactaccagcaggcacagaaaatcgtcattgatgacgctgcttatgtgtACCTGTTCCAGCATGGGATTGaa                                                                                                                     <  1:182254‑M1/23‑1 (MQ=255)                       aggCGAGATAATAATCGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAac                                                                                                                    <  2:160296/141‑1 (MQ=255)                                                       ccgccACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCGCTTTGTTCATCGCCAg                                                                                    >  2:331730/1‑143 (MQ=255)                                                        cgtcaccacTATCACCATCCCCCAGCAACGTTGGCGTAAAATTCTGTGGGTGGTGCCGAAACTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGt                                                                                   <  1:165383/140‑1 (MQ=255)                                                                            cccAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATCTACTCATGGTATTGATATAGACGACCTGTTCAAGAATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTGGTTTTTCTGGATCAg                                                               >  1:24969/1‑143 (MQ=255)                                                                                         gCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAagca                                                  >  1:287941/1‑143 (MQ=255)                                                                                         ccgggactaccagcaggcacagaaaatcgtcattgatgacgctgcttatgtgtACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAagca                                                  >  1:135361‑M1/54‑143 (MQ=255)                                                                                             aaaaTACTCCAGAAGGTCACGTTATTTCCTCATGGTATTGATATTGAAGACCTGTTCCAGAATAGAAAAGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCgc                                              >  1:317868/1‑142 (MQ=255)                                                                                                      cAGAAGGTCACGTCACTTACTCAGGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGa                                     <  1:949/143‑1 (MQ=255)                                                                                                          aGGGCACGGTAGTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCCCCTAGTCCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGAt                                 <  1:151134/143‑1 (MQ=255)                                                                                                             agaaagtcgtgattgaggacgctgcttatgtgtACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGAtttt                              >  2:182254‑M1/34‑143 (MQ=255)                                                                                                                          tCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAACGCCTTTCACATCTTTGTTCATCGCCCGTCGGCAGTCTTTCTCGAACAGGTACACATAAGCAGCGTCATCAATGACGCTTTTCTCTGCCTGCTgg                 >  2:26762/1‑143 (MQ=255)                                                                                                                            aTGGTATTGATATTGAAGTCCTGTTCCATCATTGGATTGAACACAAAGCCTTTCACCTCTTTATTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTa               <  1:74943/143‑1 (MQ=255)                                                                                                                                   taattgtgaAGATCTGTTCAAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTCGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCgg        <  1:42696/137‑1 (MQ=255)                                                                                                                                        ttgaAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCATCCTCAGTGACGATTTTCTGTGCCTGCTGTTCGTCCCGTGTACg   >  1:246175/1‑143 (MQ=255)                                                                                                                                         tgaGGACCTGGTCCATCTTGGGATTGAACACAGAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCTGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGc  <  2:319862/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                          GCGCCGGATCACCAGGGATCAGATGCGAGATAATAAACGTAATCACGCAGACGCCCGCCACCACGAGCACCAGCCCCCAGCAGCGTTGGCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGC  >  NC_000913/1560818‑1561096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.