New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1560959 =	14 (0.780)	3 (0.180)	3/242	NT	15.9%	coding (1523/1551 nt)	ddpA	putative D,D‑dipeptide ABC transporter periplasmic binding protein
	?	NC_000913	1561038 =	19 (1.150)					coding (1444/1551 nt)	ddpA	putative D,D‑dipeptide ABC transporter periplasmic binding protein

GCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCA  >  NC_000913/1560906‑1561178                                                                                                                                     |                                                                                                                                             gCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAagca                                                                                                                                    >  1:287941/1‑143 (MQ=255) ccgggactaccagcaggcacagaaaatcgtcattgatgacgctgcttatgtgtACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAagca                                                                                                                                    >  1:135361‑M1/54‑143 (MQ=255)     aaaaTACTCCAGAAGGTCACGTTATTTCCTCATGGTATTGATATTGAAGACCTGTTCCAGAATAGAAAAGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCgc                                                                                                                                >  1:317868/1‑142 (MQ=255)              cAGAAGGTCACGTCACTTACTCAGGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGa                                                                                                                       <  1:949/143‑1 (MQ=255)                  aGGGCACGGTAGTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCCCCTAGTCCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGAt                                                                                                                   <  1:151134/143‑1 (MQ=255)                     agaaagtcgtgattgaggacgctgcttatgtgtACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGAtttt                                                                                                                >  2:182254‑M1/34‑143 (MQ=255)                       aaaatcgtcattgatgacgctgcttatgtgtacctgttccagaaaaactaccaactggcgatgaacaaagaggtgaaaggctttgtgttcaatcccatgctggaacaggtACACATAAGCAGCGTCCTCAATCACGACTTTCt                                                                                                              >  2:182254‑M2/111‑143 (MQ=255)                                  tCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAACGCCTTTCACATCTTTGTTCATCGCCCGTCGGCAGTCTTTCTCGAACAGGTACACATAAGCAGCGTCATCAATGACGCTTTTCTCTGCCTGCTgg                                                                                                   >  2:26762/1‑143 (MQ=255)                                    aTGGTATTGATATTGAAGTCCTGTTCCATCATTGGATTGAACACAAAGCCTTTCACCTCTTTATTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTa                                                                                                 <  1:74943/143‑1 (MQ=255)                                           tgcttatgtgtacctgttccagaaaaactaccaactggcgatgaacaaagaggtgaaaggctttgtgttcaatcccatgctggaacaggtACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCgg                                                                                          >  1:135361‑M2/91‑143 (MQ=255)                                           taattgtgaAGATCTGTTCAAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTCGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCgg                                                                                          <  1:42696/137‑1 (MQ=255)                                                ttgaAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCATCCTCAGTGACGATTTTCTGTGCCTGCTGTTCGTCCCGTGTACg                                                                                     >  1:246175/1‑143 (MQ=255)                                                 tgaGGACCTGGTCCATCTTGGGATTGAACACAGAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCTGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGc                                                                                    <  2:319862/143‑1 (MQ=255)                                                                      gATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACCCATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGAGTCAGGTTGGTGGTCgaa                                                               >  1:161268/1‑141 (MQ=255)                                                                             cacaAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTCGTCCCGGGTACGCTGCGTCTGGTCGGTGATCGCAAGCGCAt                                                        >  1:214487/1‑143 (MQ=255)                                                                                aaaGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTgc                                                     >  1:316000/1‑143 (MQ=255)                                                                                 aaGCCTTTCTTCTCTTTGTTCATCTCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTGCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTgcg                                                    <  1:29215/143‑1 (MQ=255)                                                                                            ctctTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAACGCATTGCGCAGTAACTTAt                                         >  1:136877/1‑143 (MQ=255)                                                                                                       tCGCCAGTTGGTAGTTCTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGAGTCTGGTCGGTGGGAGCCAACGCATTGGTCAGCAAGTTGTCGAcatagctg                              >  2:292275/1‑136 (MQ=255)                                                                                                         gCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTTCGTCTGGTCGGTGGTCGCAAGCGCATTTCGCAGTAACTTATCGACATCACTAtt                            >  1:150431/1‑143 (MQ=255)                                                                                                              ttcaatcccatgctggaacaggtACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCAt                       <  1:182254‑M2/120‑1 (MQ=255)                                                                                                                  tAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTACCGGGTACGATGCGTCTGGTCGGTGGTCGCAAGCGAATAGCGCAGTGACTTACAGAACTCACTGTATTCGTAGaa                   >  2:325946/1‑143 (MQ=255)                                                                                                                   aGTCTTTCGGGAACATCTCCACATATGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAAc                  <  2:214487/143‑1 (MQ=255)                                                                                                                    gTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGCACg                 >  1:314046/1‑143 (MQ=255)                                                                                                                                   gtACACATAATCAGCGTCAGCAATGTCGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCa  <  1:334195‑M2/141‑1 (MQ=255)                                                                                                                                   gtACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTCCGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCa  >  1:307796‑M2/3‑143 (MQ=255)                                                                                                                                   gtACACAGAAGCAGCGTCATCGATGACGATGTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCa  <  1:189510‑M2/141‑1 (MQ=255)                                                                                                                                     |                                                                                                                                             GCGTAAAATACTCCAGAAGGTCACGTTATTTACTCATGGTATTGATATTGAAGACCTGTTCCAGCATGGGATTGAACACAAAGCCTTTCACCTCTTTGTTCATCGCCAGTTGGTAGTTTTTCTGGAACAGGTACACATAAGCAGCGTCATCAATGACGATTTTCTGTGCCTGCTGGTAGTCCCGGGTACGCTGCGTCTGGTCGGTGGTCGCAAGCGCATTGCGCAGTAACTTATCGACCTCACTGTTTTCATAGAACGAGCGGTTACCCGGCA  >  NC_000913/1560906‑1561178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.