| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 0 (0.000) | 28 (0.760) | 26/252 | 0.3 | 100% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 0 (0.000) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
GGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA > NC_000913/1207663‑1207947 | ggggccaGGCGGGGGAAGGGGCGGCACGACCAGTTACGTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG < 1:340107‑M1/140‑1 (MQ=255) cTGGAGAAGGTGCGCCACGACCAGTTACTTACCGCACTCCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCTATATCAAATCGGATGGCACTATGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatt < 2:438710‑M1/143‑10 (MQ=255) agatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa < 2:761762‑M1/27‑1 (MQ=255) gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTCTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAGGGctctgcattacc > 1:671258‑M1/1‑131 (MQ=255) ggggtcgcacgaccAGTGACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg < 2:250808‑M1/137‑18 (MQ=255) ggggCGGCACGACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg < 1:662378‑M1/143‑18 (MQ=255) cggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTCAGACCCCTGAACTCGTTTGCCGATATCAAATCGCATGGCACTGTGCAAACGGCTCTCGAAAACCGTAGTTTGCGAGAAGGctctgcattacctgttggtgt > 2:166960‑M1/1‑122 (MQ=255) gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcatcttcataaacgTTGGCTTGGGAGAAGGAGCAAAACTCAATGCAGAAACGGCt < 2:706405‑M1/41‑1 (MQ=255) accaccgGTTACGTACCGCACGTCGCGCGCTGCTGTTAAGCCGCAAGAGTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAGCGTCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccg < 2:70316‑M1/140‑26 (MQ=255) aGTTACTTACCGCCTTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg < 2:762864‑M1/143‑32 (MQ=255) gttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttctttattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:544629‑M1/96‑143 (MQ=255) ttgatacgcgtacatatccaataagcatgttaaatccccctgttaaaagcaggaatgatgccatttgtttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg > 1:348797‑M1/95‑143 (MQ=255) ttacttccCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg < 2:76450‑M1/143‑34 (MQ=255) tgatacgcgtacatagccaataagcatgttaaatccccctggtaaaatcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa > 2:86427‑M1/94‑143 (MQ=255) ttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCACATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtctcggctccgtggcct > 1:753558‑M1/1‑106 (MQ=255) gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTTGCGATATCAAATCGGATGGCACTTTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc < 2:367449‑M1/143‑43 (MQ=255) ttCGCGCGCTGCTGTTAAGCCGCAAGAATCGGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact < 2:170239‑M1/143‑47 (MQ=255) atagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGTAGCAACGGCTACATTTGGACGAACAGGTTTc < 1:422860‑M1/62‑1 (MQ=255) atagccaataagcacgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc > 1:154060‑M1/82‑143 (MQ=255) tagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGCCGGCGCACACCTCTATGCAGCAACGGCTACATTAGGACGCACCgatttaa < 1:306079‑M1/63‑3 (MQ=255) ccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcatacacgTTGGTTTGGGAGAAGGAGCAAAACTCACTGCCGCAACGGCTACCCTAGGACGCACCGGTTGCATAg < 1:262920‑M1/66‑1 (MQ=255) caataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACAGCTACATTAGGACGCACCGGCTTCATAGc < 1:420717‑M1/67‑1 (MQ=255) ttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttccgcccctccgccaaccggctg > 1:738962‑M1/1‑83 (MQ=255) gCAATAATCCGTTTGGCGATAGCAAATGTGATGGCACTGTGCAAACGGCTCTCGAAAACCTTTGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa < 2:769798‑M1/143‑68 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatg < 2:250201‑M1/143‑70 (MQ=255) ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt < 1:695422‑M1/86‑1 (MQ=255) aGAATCCGTTTGGCGTTGTCAAAGCGGGTGGCATTGTGCAAGAGGCTCTCGAAAACCTTGTCTTGGGAGACGGctttgcattacctgttggtgtcccggttccgtggccttcagccactccgctaacaggctggctgaaatgc < 2:557564‑M1/143‑71 (MQ=255) cctggtaaaagcaggaatgatgctatttggttgttatttcatcaatttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg > 1:441251‑M1/57‑143 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGCTTATGattggtcg < 2:370038‑M1/88‑3 (MQ=255) taaaagcaggattgatgccgtttgcttgttagttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt > 2:803617‑M1/52‑143 (MQ=255) aaagcagtaatggtgccagttgcttgttatttcttcattttcataaacgTCGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa > 1:502088‑M1/50‑143 (MQ=255) aaagcagggatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa > 2:336527‑M1/50‑143 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCa > 1:678057‑M1/47‑143 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGGGGTATTGAGCa < 2:571639‑M1/97‑1 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcccacaggctggctgaaatgcaacgggaccgcttg > 2:634574‑M1/1‑59 (MQ=255) taatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa > 1:692396‑M1/43‑143 (MQ=255) aatgatggcatttgcttgttatttctccattttcctaaacgTTGGTTTGGGAGGAGGAGCGAAACTCAATGCAGCAACGGCTATATTAGGACGCACCTGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAg > 2:555305‑M1/42‑143 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgc > 2:322966‑M1/1‑53 (MQ=255) tgccatttgcttgttatttcttcattttcctatacgTTCGGTCGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATc > 2:160499‑M1/37‑143 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggcttaaatgcaatggtgccgctttttctgctgaagaatac > 1:480742‑M1/1‑43 (MQ=255) ttgttttttcttctttttcataatcgTTGGTTTGGGAGAAGGAGAAAAACGCAAGGCAGCAAGGGCTACCTTAGGACGCACCGGTTTCATAGCTAGACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggg > 1:475840‑M1/27‑143 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgcctgaaatgcaatggggccgctttttcagctcacgaaaacc > 2:582066‑M1/1‑42 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttacgtggccttcagccactccgccaacaggctgggtgagatgcactggtgccgctttttctgctgaagaatacccgga > 2:376890‑M1/1‑38 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAATAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATAATTCAGTGGGGGTgg < 2:171944‑M1/122‑1 (MQ=255) taaacGGTTCTCGAAAACGTTGGTTGGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaact < 1:83132‑M1/142‑109 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaact > 2:696323‑M1/1‑35 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggcttgctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaa < 1:179960‑M1/143‑115 (MQ=255) attttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAAGATTGGTGGTATTGAGCAATAAGTAATCATTCAGCGGGGGTGGAATGCCGc < 2:463481‑M1/130‑1 (MQ=255) ctctCGAAAACCTTGGTTTGGGAGAAGGcgctgcagtaccggtaggggtcccggttccgtggccgtcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaag < 1:61502‑M1/143‑116 (MQ=255) ctatcgaaAACCTTGGTGTGGGAGAAGGctctgcattaccggtgggtgtcccggttccgtggccttcagccactacgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaag < 1:599966‑M1/140‑116 (MQ=255) tctcGAAAACCTTGATTTGGGAAAAGGctctgcattacctgttggagtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgcattttgtgctgaagaagaacccgaacaggcgcaga > 2:112175‑M1/1‑27 (MQ=255) ccTTGGTTTGGGAGAAGGctcggcattacctgttggtgtcccggttccgtggcctgcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccga < 1:205013‑M1/143‑126 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGTGCTATCAGTTATCATTCAGAGAGAGTGAAATGCAGCAAAAGCAtctac < 1:425774‑M1/142‑3 (MQ=255) gTTGGTTGGGGAGAAGGAGCAACGCTCAGGGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATTCCGGTGATGATTGGTGGTATTGAGCAATCAGTAATCTGTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc > 2:787031‑M1/2‑143 (MQ=255) cTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatccccggaactggctaagtcttatccgac > 1:704828‑M1/1‑17 (MQ=255) GGTTTGGGAGAAGGAGGTAAACTCAATGCAGGAACGGCTACATTAGGAGGCGCCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCGATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCctc > 1:251336‑M1/1‑143 (MQ=255) gTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcccccaacaggctggttacatatcaagtttttcgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaat > 1:798425‑M1/1‑13 (MQ=255) tttGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcatccactccgccaacaggctggctgaaatgcaatggtgccactctttctgctgaagaatacccgcaacagtcaaaggattatccaacaaaca > 2:204335‑M1/1‑12 (MQ=255) tttGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaactgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaata > 1:82267‑M1/1‑12 (MQ=255) TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGGACCGGGTACAAAGCTATCCCGATCATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTACGGGTGGCATGCCGCAAAAGCTTCTGACTCTg < 2:478993‑M1/143‑1 (MQ=255) ggctgtgtattaccttttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctga < 2:487488‑M1/143‑142 (MQ=255) gctctgcattacctgttcgtgtcccggggccgtggccgccagccaccccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgat < 1:185852‑M1/143‑143 (MQ=255) | GGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA > NC_000913/1207663‑1207947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |