| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 0 (0.000) | 28 (0.760) | 26/252 | 0.3 | 100% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 0 (0.000) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
ATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAC > NC_000913/1209461‑1209736 | aTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGGGTGGCTGGCGGCCACGGCCCCGGGACACGAACAGGTAATGCAGAGc < 1:185852‑M2/143‑2 (MQ=255) tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAAAAGGTAATACACAGcc < 2:487488‑M2/143‑3 (MQ=255) tgtttgtTGGATAATCCTTTGACTGTTGCGGGTATTCTTCAGCAGAAAGAGTGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGATGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa > 2:204335‑M2/3‑131 (MQ=255) tatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCAGTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa > 1:82267‑M2/1‑131 (MQ=255) atttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGAAAAACTTGATATGTAACCAGCCTGTTGGGGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaac > 1:798425‑M2/1‑130 (MQ=255) tttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCCCTAAACGTTTCGGTTGGGCATCTCCGCGATTGCGCCTTCTTTGGGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAAcc > 1:801519/1‑143 (MQ=255) gTCGGATAAGACTTAGCCAGTTCCGGGGATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaag > 1:704828‑M2/1‑126 (MQ=255) tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGCAGGCCACGGAACCGGGACACCAACAGGTAATGCCGAGccttctcccaaaccaagg < 1:205013‑M2/143‑19 (MQ=255) tctgcgcctgtTCGGGTTCTTCTTCAGCACAAAATGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACTCCAACAGGTAATGCAGAGccttttcccaaatcaaggttttcgaga > 2:112175‑M2/6‑116 (MQ=255) cTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGTAGTGGCTGAAGGCCACGGAACCGGGACACCCACCGGTAATGCAGAGccttctcccacaccaaggttttcgatag < 1:599966‑M2/143‑29 (MQ=255) cTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGACGGCCACGGAACCGGGACCCCTACCGGTACTGCAGCGccttctcccaaaccaaggttttcgagag < 1:61502‑M2/143‑29 (MQ=255) tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCAAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagc < 1:179960‑M2/143‑30 (MQ=255) aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccccaaccaacgttttcgagaaccgttta < 1:83132‑M2/143‑36 (MQ=255) aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttg > 2:696323‑M2/1‑108 (MQ=255) tCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAGTGCATCTCACCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGTAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac > 2:376890‑M2/1‑105 (MQ=255) ggTTTTCGTGAGCTGAAAAAGCGGCCCCATTGCATTTCAGGCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtg > 2:582066‑M2/1‑101 (MQ=255) gTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTAAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgc > 1:480742‑M2/1‑100 (MQ=255) gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattt > 2:322966‑M2/1‑90 (MQ=255) caagCGGTCCCGTTGCATTTCAGCCAGCCTGTGGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc > 2:634574‑M2/2‑84 (MQ=255) gCATTTCAGCCAGCCTGTTAGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAAAGccgtctcccaagacaaggttttcgagagcctcttgcacaatgccacccgctttgacaacgccaaacggattct < 2:557564‑M2/143‑74 (MQ=255) cATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattctt < 2:250201‑M2/143‑75 (MQ=255) tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacaaaggttttcgagagccgtttgcacagtgccatcacatttgctatcgccaaacggattattgc < 2:769798‑M2/143‑77 (MQ=255) cagccGGTTGGCGGAGGGGCGGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaa > 1:738962‑M2/1‑60 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaaccgattcttgcggcttaacagcagcgcgcgaa < 2:170239‑M2/143‑98 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaaagtgccatccgatttgatatcgcaaaacggattcttgcggcttaacagcagcgcgcgaagtgc < 2:367449‑M2/143‑102 (MQ=255) aGGCCACGGAGCCGAGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatgtgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaa > 1:753558‑M2/1‑37 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgggaagtaa < 2:76450‑M2/143‑111 (MQ=255) cGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgcaaggcggtaagtaact < 2:762864‑M2/143‑113 (MQ=255) cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagacgcttgcacagtgccatccgatttgatatcgccaaacggactcttgcggcttaacagcagcgcgcgacgtgcggtacgtaaccggtggt < 2:70316‑M2/143‑119 (MQ=255) acacCAACAGGTAATGCAGAGccttctcgcaaactacggttttcgagagccgtttgcacagtgccatgcgatttgatatcggcaaacgagttcaggggtctgaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccg > 2:166960‑M2/1‑21 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgcagtgcggtaagtaactggtcgtgccgcccc < 1:662378‑M2/143‑127 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtcactggtcgtgcgacccc < 2:250808‑M2/143‑127 (MQ=255) ggTAATGCAGAGccctctcccaaaccaagggtttcgagagccgtttgcagagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctc > 1:671258‑M2/1‑12 (MQ=255) aaTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcatagtgccatccgatttgatatagccaaacggattcttgcggcttaacagcagcgcgcggagtgcggtaagtaactggtcgtggcgcaccttctccag < 2:438710‑M2/143‑135 (MQ=255) | ATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAC > NC_000913/1209461‑1209736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |