mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.4% | 50.3 / 29.5 | 56 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 568559 = | 1470 (35.250) | 24 (0.600) | 14/272 | 1.9 | 1.7% | coding (245/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568576 = | 1368 (34.260) | coding (262/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | 570695 = | 1681 (40.310) | 15 (0.380) | 9/270 | 3.1 | 0.94% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 1564 (39.460) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 570627 = | 1550 (37.170) | 10 (0.260) | 8/258 | 3.2 | 0.69% | intergenic (+199/‑266) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570677 = | 1485 (39.230) | intergenic (+249/‑216) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 568103 = | 1187 (28.460) | 6 (0.150) | 6/272 | 4.2 | 0.53% | pseudogene (69/213 nt) | renD | DLP12 prophage; protein RenD |
| ? | NC_000913 | 568127 = | 1131 (28.330) | pseudogene (93/213 nt) | renD | DLP12 prophage; protein RenD | |||||
| * | ? | NC_000913 | 568035 = | 1110 (26.620) | 9 (0.220) | 5/274 | 4.7 | 0.81% | pseudogene (1/213 nt) | renD | DLP12 prophage; protein RenD |
| ? | NC_000913 | 568085 = | 1123 (27.920) | pseudogene (51/213 nt) | renD | DLP12 prophage; protein RenD | |||||
| * | ? | NC_000913 | 838978 = | 45 (1.080) | 4 (0.100) | 4/272 | 5.1 | 8.5% | coding (230/678 nt) | ybiX | PKHD‑type hydroxylase YbiX |
| ? | NC_000913 | 838993 = | 43 (1.080) | coding (215/678 nt) | ybiX | PKHD‑type hydroxylase YbiX | |||||
| * | ? | NC_000913 | 2700550 = | 53 (1.270) | 3 (0.080) | 3/246 | 5.2 | 6.0% | noncoding (31/77 nt) | ohsC | small regulatory RNA OhsC |
| ? | NC_000913 | 2700601 = | 48 (1.330) | intergenic (+5/+17) | ohsC/acpS | small regulatory RNA OhsC/holo‑[acyl‑carrier‑protein] synthase | |||||
| * | ? | NC_000913 | = 2170413 | NA (NA) | 4 (0.100) | 4/276 | 5.2 | 10.5% | noncoding (243/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 2558751 | 35 (0.840) | intergenic (‑72/‑107) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ | |||||
| * | ? | NC_000913 | = 781222 | 43 (1.030) | 4 (0.100) +ATGT |
4/276 | 5.2 | 8.6% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | NC_000913 | = 781683 | 45 (1.080) | intergenic (+31/‑402) | lysQ/nadA | tRNA‑Lys/quinolinate synthase | |||||
| * | ? | NC_000913 | = 781222 | 43 (1.030) | 4 (0.100) +AT |
4/280 | 5.3 | 8.5% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | NC_000913 | = 2521361 | 44 (1.060) | intergenic (+33/+232) | lysV/xapR | tRNA‑Lys/DNA‑binding transcriptional activator XapR | |||||