New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 566777 =NA (NA)2586 (61.010) 271/280 0.0 98.5% noncoding (1/1258 nt) IS3 repeat region
?NC_000913 = 572471 39 (0.910)coding (6/456 nt) ybcN DLP12 prophage; DNA base‑flipping protein

Only 100 of 2621 total aligned reads displayed.

AGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/566918‑566777
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCACCGGAGTTGTTC  <  NC_000913/572471‑572329
                                                                                                                                                                                                                                                                                             
     CAGGGTTTGACTGCGAAATTCAGGCGAAGGCGGTTTACGGGGTTTTTTACTGGTTGAGACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCAC                                                                                                                                           <  1:271757/143‑1
      AGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACG                                                                                                                                          >  1:780639/1‑143
      AGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACG                                                                                                                                          >  1:602388/1‑143
          CTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTC                                                                                                                                      <  1:506912/143‑1
           TTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCTCCTATTGCTGGGTAAGATCCGTTCACGCTTCC                                                                                                                                     >  2:73129/1‑143
              ACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCT                                                                                                                                  >  1:534459/1‑143
                TGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCC                                                                                                                                >  1:325213/1‑143
                TGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTCAGACTCTTGATTCTTATCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCa                                                                                                                                >  1:792308/1‑142
                  CGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCAACTATTGCTGGGTAAGATCAGTTTCCGCTTCCCCTCCGC                                                                                                                              >  2:181485/1‑143
                   GAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGGGTTTTCTCACTTAGCCGCGTGTCCACTATTGTTGGGTAAGATCAGTTCATGCTTCACCTCCGCA                                                                                                                             >  1:68665/1‑143
                      atcCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTGTTGGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACGTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAG                                                                                                                          <  1:194860/140‑1
                      ATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAG                                                                                                                          <  1:617539/143‑1
                       TTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGt                                                                                                                         >  2:52149/1‑142
                          AGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCA                                                                                                                      >  1:646136/1‑143
                           GGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTATGATCAGTTCACGCTTCCCCTCTGCAGAGGTCAA                                                                                                                     >  2:193607/1‑143
                           GGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGCGGTCAA                                                                                                                     >  1:452546/1‑143
                               AATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGC                                                                                                                 >  2:385560/1‑143
                                 TGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTA                                                                                                               <  2:562928/143‑1
                                  GCTGGTTACCGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTGTTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAG                                                                                                              <  2:503929/143‑1
                                    TGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTACTGCTGGGTAAGATCCGTTCACGCTTCCTCTCCGCAGAGATTAAACGCTAGAT                                                                                                            >  2:644639/1‑143
                                        tcCGGTGTTTTTTCCTGGTTGATACTGTTTTTGTCCTGTGAGTCACCTCTGACTGAGAGTTTACTCCCTTCGCCGCGTGTCCACTACTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCca                                                                                                        <  2:207900/141‑3
                                            GGGTTTTTTACTGGTTGATACTTTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAA                                                                                                    <  2:246635/143‑1
                                            GGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCA                                                                                                                                            >  1:422572/1‑103
                                            GGGTTCTTTACTGGTTGATACTGAATTTGGCATGTGCGTCACCCCTCGCCGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAA                                                                                                    <  1:497465/143‑1
                                             GGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAAT                                                                                                   >  1:439420/1‑143
                                              GTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATT                                                                                                  >  2:597139/1‑143
                                               TTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTTAGATCAGTTCACGCTTCCCCTCCGCAGCGGTCAACCGCTAGATCCAAcccactg                                                                                                 >  2:265132/1‑136
                                                TTTTTACTGTTTCATACTTTTTTTGTCATGTGAGTCCCCTCTGACTGAGACTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGC                                                                                                <  2:745799/143‑1
                                                TTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGC                                                                                                <  1:718876/143‑1
                                                 TTTTACTGGTTGGTACTGTTTTTGTCATGTGAGTCACCTCTGTCTGTACGTCTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCA                                                                                               <  1:334635/143‑1
                                                       TGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCA                                                                                         >  1:770973/1‑143
                                                          TTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCGTTT                                                                                      >  1:548872/1‑143
                                                          TTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTT                                                                                      <  1:154803/143‑1
                                                          TTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTT                                                                                      >  1:589953/1‑143
                                                             ATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTG                                                                                   <  1:69530/143‑1
                                                              TACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGC                                                                                  >  1:287064/1‑143
                                                               acgGTTTGTGTGAGGTGAGTCACCTCTGCATGAGCGTTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCA                                                                                 <  1:630872/140‑1
                                                               ACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCA                                                                                 >  1:562898/1‑143
                                                                 gGTTTTGGTCGTTTGGGTCCCCTTTGACTGAGAGTTTCCTCACTTAGCCGCGTGTCGACTATTGCTGGGTAAGATCAGTTCACGCGTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATC                                                                               <  2:166816/142‑1
                                                                    TTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAACGAATTCCAGGCGCCTTGCTCCATCTGT                                                                            >  2:67154/1‑143
                                                                    TTTTGTCATGTCAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGATCCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGT                                                                            <  2:280706/143‑1
                                                                       TGTCATGTGAGTCGCCTCTGACTGAGAGTTGACTCACTTAGCCGCGTGTACACTATTGCTGGGTAAGATCAGGTCACGCGTCCCCTGCGTAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAA                                                                         <  2:130109/143‑1
                                                                       TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAA                                                                         <  1:251633/143‑1
                                                                       TGTCATGCGATTCAACTCCGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAATCGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAA                                                                         <  1:370846/143‑1
                                                                        GTCATGTGCGTCACCTCTGACTGAGAGTTTACTCTGGTAGCCGCGTGCCCAGTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAG                                                                        <  2:406322/143‑1
                                                                        GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAG                                                                        <  1:736506/143‑1
                                                                          CATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAGACGCTAGATGCAAAGAATTGCCGGTGCATGTCTGCAGCTGTGAAGGG                                                                      >  2:799835/1‑143
                                                                          CATGAGAGTATCCTCGGTCTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGG                                                                      <  1:706246/143‑1
                                                                           ATGTGAGTCACCTCTGACTGAGCGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTACGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCACGTGCATTCCCGCATCTGTGAccggg                                                                     >  2:298335/1‑138
                                                                              TGAGTCACCTCTGCCTGAGAGTTTGCTCACCTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAATCGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAA                                                                  <  2:492963/143‑1
                                                                                AGTCACCTCTGACTGAGAGTTTACTTACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGA                                                                <  2:355427/143‑1
                                                                                AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGA                                                                <  1:467316/143‑1
                                                                                  gCACCTCTGACTGAGAGTTTACTCACTGAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGA                                                              <  1:347284/142‑1
                                                                                    ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCATATAATTGCAGGTTCATTTCTGCATCTGTGAAGGGAGAAGAGAGT                                                            <  1:759645/143‑1
                                                                                      CTCTGACGGGGGGTTTACGCGCTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCGCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTT                                                          <  2:548781/143‑1
                                                                                          GACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCTTTGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCGGCATCTGTGAAGGGAGAAGAGAGTTTGGAT                                                      <  1:143230/143‑1
                                                                                           ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATT                                                     >  2:538269/1‑143
                                                                                           ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTGTGGATT                                                     >  2:118625/1‑143
                                                                                            CTGTGAGTTTACTCACTTAGCCGCGTGTCCTCTATTGCGGTGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGTTCAGACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTG                                                    <  2:660838/143‑1
                                                                                             TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGATTGGATTGT                                                   >  1:186785/1‑143
                                                                                             TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCAACGGTGAAGGGAGAAGAGAGTGTGGATCGT                                                   >  1:204412/1‑143
                                                                                              GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTA                                                  >  1:384772/1‑143
                                                                                              GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCATCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCGGTGAAGGGAGAAGAGAGTAGGGATAGTA                                                  >  2:616950/1‑143
                                                                                               AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTAT                                                 >  2:46926/1‑143
                                                                                               AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTAT                                                 <  1:359824/143‑1
                                                                                                GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCACCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTCCGGCAGCAGTGAAGGGAGAAGAGAGATTGGATTGTATG                                                >  2:320446/1‑143
                                                                                                 AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGT                                               <  1:312192/143‑1
                                                                                                  GTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTG                                              >  1:300743/1‑143
                                                                                                    TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCG                                            <  2:581203/143‑1
                                                                                                     TACTCACTTAGCCGCGTGTCCACGATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGC                                           <  1:95859/143‑1
                                                                                                      ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGCGAAGAGAGTCTGGATTGTATGTGCGCA                                          >  2:451376/1‑143
                                                                                                        TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGCTTGTATGTGCGCATA                                        >  1:573563/1‑143
                                                                                                        TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATA                                        >  1:232103/1‑143
                                                                                                        TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGT                                                                            <  1:657807/107‑1
                                                                                                        TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAAATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATA                                        >  1:170186/1‑143
                                                                                                         CACTTAGCCGCGTGTCCACTATTGCTGAGTAAGATAAGTTCACGCTTCCCCTCCGCAGATGGCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCAGATGTGAAGGGAGAAGAGTGTTTGGATTGTATGTGaggctaa                                       >  2:68961/1‑136
                                                                                                           ccTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAAC                                     <  1:408457/141‑1
                                                                                                           CTTAGCCGCGTGTCCACTATTGCCGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAAC                                     <  1:524553/143‑1
                                                                                                            TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGACCGGAGCAGAGAGCTTGGATTGCAGGTGCGCCTAAACG                                    >  2:151334/1‑143
                                                                                                            TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACG                                    >  1:128248/1‑143
                                                                                                                CCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCTCTCCGCCGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGCGAAGGGCGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCC                                >  2:436967/1‑143
                                                                                                                CCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCC                                >  1:396708/1‑143
                                                                                                                CCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCC                                >  2:311138/1‑143
                                                                                                                    tTGTCCACTATTGCTGGGTAAGATCGGTTCACGCTTCCCCTACGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATGTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTT                            <  1:75075/142‑1
                                                                                                                     TGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTT                           <  2:33538/143‑1
                                                                                                                      GTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGACGAGAGTGTGGATTGTATGTCGGCATAACCGTCCACGCTTA                          >  2:627149/1‑143
                                                                                                                        CCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGC                        <  1:481905/143‑1
                                                                                                                         CACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGtg                       <  2:370806/143‑3
                                                                                                                         CACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCT                                                                              <  1:21980/88‑1
                                                                                                                          ACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATCAACGTCCCCGTTTACCGC                      >  1:100661/1‑143
                                                                                                                           CTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCA                     <  1:87220/143‑1
                                                                                                                            TATGGCGGGGGAAGATCAGGTCCCGCTCCCCCTCCGCAGAGGTCAAACGCGAGATGCAAAGAATTGCAGGTGCATGTCTGCATCTGTTAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAG                    <  1:672930/143‑1
                                                                                                                              TTGTTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGAGGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAA                  <  2:226998/143‑1
                                                                                                                              TTGCTGGGTAAGATCAGTTCACGCTTCCCCGCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATAGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAA                  <  2:704030/143‑1
                                                                                                                                 CTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAACCGTCCCCGTCTAGCGCAGAAGcc               >  2:78632/1‑141
                                                                                                                                   GGGTAAGATCAGGTCGCGCTTCCCCTCCGCAGAGGTCAGACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCAC             <  2:420542/143‑1
                                                                                                                                     GTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCACGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGCTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCACCG           >  2:755211/1‑143
                                                                                                                                         GATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATCGCCGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGGTTGGTTTGTATGTGCGCATATACGACCCCGTCTAGCGCAGAAGACACCGGAGc       >  2:716545/1‑142
                                                                                                                                           TCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTATGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGACACCGGAGTTG     >  2:767405/1‑143
                                                                                                                                            CAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGGGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCGCCGGAGTTGT    >  1:115269/1‑143
                                                                                                                                                                                                                                                                                             
AGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/566918‑566777
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCGCATAAACGTCCCCGTTTAGCGCAGAAGTCACCGGAGTTGTTC  <  NC_000913/572471‑572329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.