New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	2586 (61.010)	271/280	0.0	98.5%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	39 (0.910)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

CGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCT  >  NC_000913/566635‑566912                                                                                                                                               |                                                                                                                                         cGAAGGTCGCAGAAGTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCt                                                                                                                                          <  2:181989/143‑1 (MQ=255) cGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCACCCGTAATCt                                                                                                                                          >  2:659523/1‑143 (MQ=255)    agttCGCAGACATTAACGCTAAGCTCTGACGGAAATGACCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTTGTGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                       <  1:423822/140‑1 (MQ=255)     gttggCAGAAAATAACGCTAAGGTCCGACTGAAAGGAGCGAGTGCATGACGGGCAAAGCGGCAATTATTCATTGCCTGGGGACGCATCAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc                                                                                                                                      <  2:303619/139‑1 (MQ=255)      aTCGCAGAAATTAAAGCTAAGCTCGGCCTGAAAGGAGCAAGGGTATGACGGGAAAAGAGGCAATAATTCACACCCTGGGGCCGCATAAGAGCTGCTTTGCACAGGACCTCGACGCGGTAACACGCGCCACCGTCCTCTGaccg                                                                                                                                     >  2:241089/1‑140 (MQ=255)        cgaaGAAATTAAAGCTAAGTTCGGCCTGAAAGGAGAAATGGCAGGACGGGCAAAGAGGCAATCATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTa                                                                                                                                   <  1:403949/140‑1 (MQ=255)          cAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc                                                                                                                                 >  1:486108/1‑143 (MQ=255)                    aGCTAAGATCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATGATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt                                                                                                                       <  1:126019/143‑1 (MQ=255)                      cTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTgg                                                                                                                     >  1:676364/1‑143 (MQ=255)                           ttCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcg                                                                                                                >  1:511222/1‑143 (MQ=255)                              ggACTGGAAGGAGCAAGGGTATGGCGTGCAAAGAGGCAATTAGTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCgg                                                                                                             <  2:212680/143‑1 (MQ=39)                                  tGAAAGGCGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATCAGAGCGTCTGAGCACCGCACGTTGCAGCGGAAACAGGCGCAACCGTACACTGATCCTACCCAGCAATAGTGGACACCCAGCTac                                                                                                         >  2:156427/1‑142 (MQ=255)                                  tGAAAGGAGCAAGTGTATGACGGGCACAGAGGCAATTATTCATTACCTGGGGACGCATCAGAGCTTCTGTGCACAGGACGTTGCCGCGGCAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGCACACCCGGccac                                                                                                         >  2:554424/1‑140 (MQ=255)                                  tGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACACATAAGCGCTTTTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAGTCTGATCTTACCCAGCAATAGGGGACACGCGGCTaa                                                                                                         >  1:113905/1‑143 (MQ=39)                                    gaaGGAGCAGGTGTATGACGGCGAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                       <  2:148175/142‑1 (MQ=255)                                          gCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCTGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa‑a                                                                                                >  2:277651/1‑143 (MQ=255)                                               tgtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTC‑ACctct                                                                                           >  1:322147/1‑143 (MQ=255)                                                 tATGTCGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCtca                                                                                         <  2:405415/143‑1 (MQ=255)                                                     aCGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGCA‑AAATCtcagtca                                                                                     >  2:338398/1‑143 (MQ=255)                                                        ggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAGTAGTGGACACGCGGCGACGTGAGTA‑AACTCTCAGTCagag                                                                                  >  1:67281/1‑143 (MQ=255)                                                                 gCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTcac                                                                         >  1:144034/1‑143 (MQ=255)                                                                  cAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGCCACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTcaca                                                                        >  1:449347/1‑143 (MQ=255)                                                                   aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCGGTCAGAGGTGACTCACAt                                                                       >  1:782250/1‑143 (MQ=255)                                                                         tCATTTCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTGGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACaaa                                                                 <  2:247139/143‑1 (MQ=255)                                                                           aTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCCACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                               <  1:596239/143‑1 (MQ=255)                                                                           aTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                               >  1:163138/1‑143 (MQ=255)                                                                             tACCTGGTGACGCATAAGAGCTTCTGTGCACCGGACGTTGCCGCGGTATCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACa                                                             <  2:97787/143‑1 (MQ=255)                                                                             tACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTATTTTTTGACTCACATGACAAAAACa                                                             <  2:486108/143‑1 (MQ=25)                                                                                        gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAACACAGTATCAActct                                                  >  1:141763/1‑140 (MQ=255)                                                                                           tAAGAGCTTCTGTGCACAGGACTTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa                                               >  1:671398/1‑143 (MQ=255)                                                                                             agggCTTCGGTGCGCAGGGCGTTGCCGCGGTAGCAGGCGCAGCCGTAATCTGATGTTGCCCGGCAATAGTGGATAGGTTGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa                                             <  2:317823/140‑1 (MQ=17)                                                                                              gagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGCGGTGACTCACATGCCGAAGACAGTATCAACCTGtctatc                                            >  1:152257/1‑138 (MQ=18)                                                                                                  ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGCATCAACCAGTAAAAAAccc                                        >  2:421285/1‑143 (MQ=255)                                                                                                   tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAACTCAGTC‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAGAAAAccgc                                       >  1:104083/1‑141 (MQ=255)                                                                                                         cacaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTACAACCATTTCT‑TTAATTTTCGCACATGACAAAAACAGTCTCAACCCGTAAAAAACCCCGTacac                                 >  1:366413/1‑143 (MQ=12)                                                                                                          acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa                                <  2:34113/143‑1 (MQ=255)                                                                                                                cGTTGCCTTGCTAACAGTTGCAACCGTAATCTGATTTTACCCAGCAAGAGAGGACACGCGGCGAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTc                          <  1:202063/143‑1 (MQ=11)                                                                                                                 gTTGCCGCGGTAACAGGCGCAACCGTAATCGGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCg                         <  1:743506/143‑1 (MQ=255)                                                                                                                              cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa            <  1:277651/143‑1 (MQ=38)                                                                                                                              cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATAACAAAAACAGTATGGACCAGTAAAAACCCCCGAAAACAGCATGCGCCTGAGTTTCgac            >  1:110798/1‑141 (MQ=14)                                                                                                                                 gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACACCAACAGTATCACCCAGTCAAACACCCCGTAAACCGCCTTCGCCTGCACTTCGCGGTg         >  1:44614/1‑143 (MQ=11)                                                                                                                                        cGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCt  >  1:646238/1‑143 (MQ=11)                                                                                                                                               |                                                                                                                                         CGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTA‑AACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCT  >  NC_000913/566635‑566912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.