mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 54.5% | 3.0 / 30.7 | 33 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 50 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 570695 = | 3050 (71.440) | 43 (1.060) | 24/268 | 0.6 | 1.5% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 2732 (67.340) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 568559 = | 2532 (59.310) | 50 (1.220) | 24/270 | 0.6 | 2.1% | coding (245/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568576 = | 2332 (57.050) | coding (262/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 572411 | 769 (18.010) | 13 (0.320) | 12/268 | 2.4 | 2.2% | coding (44/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572431 | 428 (10.550) | coding (64/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 572316 = | 2526 (59.170) | 36 (0.910) | 11/262 | 2.6 | 1.7% | intergenic (+65/‑52) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | 572345 = | 1944 (49.010) | intergenic (+94/‑23) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 568684 | 2769 (64.860) | 14 (0.350) | 11/268 | 2.6 | 0.52% | intergenic (+37/‑11) | emrE/ylcJ | multidrug/betaine/choline efflux transporter EmrE/protein YlcJ |
| ? | NC_000913 | = 568696 | 2744 (67.630) | coding (2/150 nt) | ylcJ | protein YlcJ | |||||
| * | ? | NC_000913 | 568103 = | 2483 (58.160) | 13 (0.320) | 11/270 | 2.7 | 0.55% | pseudogene (69/213 nt) | renD | DLP12 prophage; protein RenD |
| ? | NC_000913 | 568127 = | 2297 (56.200) | pseudogene (93/213 nt) | renD | DLP12 prophage; protein RenD | |||||
| * | ? | NC_000913 | = 569452 | 2782 (65.170) | 16 (0.390) | 10/268 | 2.9 | 0.59% | coding (551/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | = 569457 | 2763 (68.100) | coding (556/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 315642 = | NA (NA) | 14 (0.330) | 10/278 | 3.1 | NA | noncoding (414/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315668 = | NA (NA) | noncoding (440/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 566841 | 21 (0.490) | 7 (0.220) +34 bp |
6/214 | 3.3 | 23.5% | noncoding (65/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 39 (0.910) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | 392902 = | 20 (0.470) | 7 (0.220) +34 bp |
6/214 | 3.3 | 23.8% | noncoding (65/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 39 (0.910) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||