New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1418580 =	13 (0.800)	3 (0.190)	3/252	NT	18.5%	intergenic (‑351/‑91)	kilR/sieB	Rac prophage; inhibitor of FtsZ, killing protein/Rac prophage; phage superinfection exclusion protein
	?	NC_000913	1418602 =	14 (0.900)					intergenic (‑373/‑69)	kilR/sieB	Rac prophage; inhibitor of FtsZ, killing protein/Rac prophage; phage superinfection exclusion protein

AACTGATGCCGCCAGGACTACACACAGCAATGTCGTTATTTACAACCGGAGGCGCACTCCCACCATTTAAATTTAACAGACAAGACCGACTCTTTATGGATATCGGAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAAC  >  NC_000913/1418440‑1418712                                                                                                                                             |                                                                                                                                     aaCTGATGCCGCCAGGACTACACACAGCAATGTCGTTATTTACAACCGGACGCGCACTCCCACCATTTAAATTTCACAGACAAGACCGACTCTTTATGGATATCGGAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTTcacc                                                                                                                                    <  2:262794/143‑1 (MQ=255)  tcgtatacataagtctttcgagtggctcgttagcaaaaagtttcaacaatggagtaaatacatccaacatatcaataactctcaactgtaagggtattgaaatgttaacacaagctctcgctgtaggggtatagccgagacca                                                                                                                                   >  1:151064‑M1/140‑143 (MQ=255)                  ttcgagtggctcgttagcaaaaagtttcaacaatggagtaaatacatccaacatatcaataactctcaactgtaagggtattgaaatgttaacacaagctctcgctgtaggggtatagccgagACCACCTCCGGGCTTCggtg                                                                                                                   <  2:75535‑M1/20‑1 (MQ=255)                             aaTGTCGTTATTTACAACCGGAGGCGCACTCCCACCATTTAAATTTAACAGACAAGACCGACTCTTTATGGATATCGGAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCtat                                                                                                        >  2:240959/1‑143 (MQ=255)                                       aagtttcaacaatggagtaaatacatccaacatatcaataactctcaactgtaagggtattgaaatgttaacacaagctctcgctgtaggggtatagccgagACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAg                                                                                              >  1:75535‑M1/103‑143 (MQ=255)                                                       gtaaatacatccaacatatcaataactctcaactgtaagggtattgaaatgttaacacaagctctcgctgtaggggtatagccgagACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTaa                                                                              >  1:115334‑M1/87‑143 (MQ=255)                                                                                aCAAGACCGCCTCTTTATCGGTAGCGGAAATGCGCCTTCGTGTTGTGTTGCATCGTATTTCATCGCCTCCGAACTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTgaga                                                     <  2:67261/143‑1 (MQ=255)                                                                                       cGACTCTTTATGGATATCGGAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTg                                              >  1:36615/1‑143 (MQ=255)                                                                                              tcaTGGATATCGCAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTCCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGtt                                       <  2:90810/141‑1 (MQ=255)                                                                                                          gAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGCGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATAGGTTGGAGGTATTGAc                           >  1:144163/1‑143 (MQ=255)                                                                                                                    ttCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGCGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCAttgttg                 >  2:280959/1‑143 (MQ=255)                                                                                                                     tCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGa                >  2:125753/1‑143 (MQ=255)                                                                                                                           tgtgCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGCGAGTTATTGATATGTTGGATGGATTTACTCCATTGTGGAAACttt          >  2:117032/1‑143 (MQ=255)                                                                                                                             tgCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGGGTTAACATTTCAATAACCTTACAGTTGAGAGTTATTGATAAGTTGGGTGTATTTACTCCATTGTTGAAACttttt        >  2:44031/1‑143 (MQ=255)                                                                                                                             tgCCCGGTGGTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACttttt        <  1:240959/143‑1 (MQ=255)                                                                                                                                  gttttgATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTaa   <  1:192715/141‑1 (MQ=255)                                                                                                                                  ggTTTCATTCCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTaa   <  1:99798/143‑1 (MQ=255)                                                                                                                                   gTTTCACTTCACCACCTCCGGGCTTTGGTGGTCTCGGCTATACCCCTACCGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATTTGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAAc  <  2:31918/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                     AACTGATGCCGCCAGGACTACACACAGCAATGTCGTTATTTACAACCGGAGGCGCACTCCCACCATTTAAATTTAACAGACAAGACCGACTCTTTATGGATATCGGAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAAC  >  NC_000913/1418440‑1418712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.