New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1418580 =	13 (0.800)	3 (0.190)	3/252	NT	18.5%	intergenic (‑351/‑91)	kilR/sieB	Rac prophage; inhibitor of FtsZ, killing protein/Rac prophage; phage superinfection exclusion protein
	?	NC_000913	1418602 =	14 (0.900)					intergenic (‑373/‑69)	kilR/sieB	Rac prophage; inhibitor of FtsZ, killing protein/Rac prophage; phage superinfection exclusion protein

AATGTCGTTATTTACAACCGGAGGCGCACTCCCACCATTTAAATTTAACAGACAAGACCGACTCTTTATGGATATCGGAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGA  >  NC_000913/1418468‑1418740                                                                                                                                       |                                                                                                                                           aaTGTCGTTATTTACAACCGGAGGCGCACTCCCACCATTTAAATTTAACAGACAAGACCGACTCTTTATGGATATCGGAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCtat                                                                                                                                    >  2:240959/1‑143 (MQ=255)           aagtttcaacaatggagtaaatacatccaacatatcaataactctcaactgtaagggtattgaaatgttaacacaagctctcgctgtaggggtatagccgagACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAg                                                                                                                          >  1:75535‑M1/103‑143 (MQ=255)                           gtaaatacatccaacatatcaataactctcaactgtaagggtattgaaatgttaacacaagctctcgctgtaggggtatagccgagACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTaa                                                                                                          >  1:115334‑M1/87‑143 (MQ=255)                                                    aCAAGACCGCCTCTTTATCGGTAGCGGAAATGCGCCTTCGTGTTGTGTTGCATCGTATTTCATCGCCTCCGAACTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTgaga                                                                                 <  2:67261/143‑1 (MQ=255)                                                           cGACTCTTTATGGATATCGGAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTg                                                                          >  1:36615/1‑143 (MQ=255)                                                                  tcaTGGATATCGCAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTCCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGtt                                                                   <  2:90810/141‑1 (MQ=255)                                                                              ttaacacaagctctcgctgtaggggtatagccgagaccaccgaagcccggaggtggtCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTAc                                                       >  1:115334‑M2/58‑143 (MQ=255)                                                                              gAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGCGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATAGGTTGGAGGTATTGAc                                                       >  1:144163/1‑143 (MQ=255)                                                                                        ttCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGCGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCAttgttg                                             >  2:280959/1‑143 (MQ=255)                                                                                         tCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGa                                            >  2:125753/1‑143 (MQ=255)                                                                                              ctgtaggggtatagccgagaccaccgaagcccggaggtggtCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACtt                                       >  1:75535‑M2/42‑143 (MQ=255)                                                                                               tgtgCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGCGAGTTATTGATATGTTGGATGGATTTACTCCATTGTGGAAACttt                                      >  2:117032/1‑143 (MQ=255)                                                                                                 tgCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGGGTTAACATTTCAATAACCTTACAGTTGAGAGTTATTGATAAGTTGGGTGTATTTACTCCATTGTTGAAACttttt                                    >  2:44031/1‑143 (MQ=255)                                                                                                 tgCCCGGTGGTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACttttt                                    <  1:240959/143‑1 (MQ=255)                                                                                                      gttttgATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTaa                               <  1:192715/141‑1 (MQ=255)                                                                                                      ggTTTCATTCCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTaa                               <  1:99798/143‑1 (MQ=255)                                                                                                       gTTTCACTTCACCACCTCCGGGCTTTGGTGGTCTCGGCTATACCCCTACCGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATTTGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAAc                              <  2:31918/143‑1 (MQ=255)                                                                                                                   caccgaagcccggaggtggtCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGaa                  <  2:75535‑M2/123‑1 (MQ=255)                                                                                                                    ACCTCCGGGCCTCGCCTCTCTCTGCTATACCCCTCCAGCGAGAGCTTGTGTTAACATTTCAATACCTTAACTCTTGATATTTATTGATATGCTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGaaa                 >  2:279779‑M1/1‑143 (MQ=255)                                                                                                                       tCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGAc              >  1:30412/1‑143 (MQ=255)                                                                                                                                   tggtCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGa  >  1:151064‑M2/5‑143 (MQ=255)                                                                                                                                       |                                                                                                                                           AATGTCGTTATTTACAACCGGAGGCGCACTCCCACCATTTAAATTTAACAGACAAGACCGACTCTTTATGGATATCGGAAATGCGCCTTCGTGTTGTGCCCGGTTTTATTTCACCACCTCCGGGCTTCGGTGGTCTCGGCTATACCCCTACAGCGAGAGCTTGTGTTAACATTTCAATACCCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGA  >  NC_000913/1418468‑1418740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.