mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.8% | 40.4 / 33.9 | 46 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 85 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 275149 | NA (NA) | 42 (0.850) | 32/280 | 0.5 | 1.1% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 570132 = | 3832 (77.990) | coding (1231/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | = 569159 | 3662 (74.530) | 79 (1.750) | 23/258 | 1.0 | 2.2% | coding (258/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | = 569161 | 3660 (80.850) | coding (260/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 273955 = | NA (NA) | 30 (0.610) | 25/280 | 1.0 | 0.77% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 570135 | 3847 (78.300) | coding (1234/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 570695 = | 4166 (84.790) | 34 (0.730) | 23/266 | 1.1 | 0.88% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 3681 (78.860) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 568559 = | 3674 (74.780) | 71 (1.510) | 22/268 | 1.2 | 2.0% | coding (245/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568576 = | 3410 (72.510) | coding (262/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | 568103 = | 3008 (61.220) | 19 (0.400) | 14/268 | 2.6 | 0.67% | pseudogene (69/213 nt) | renD | DLP12 prophage; protein RenD |
| ? | NC_000913 | 568127 = | 2724 (57.920) | pseudogene (93/213 nt) | renD | DLP12 prophage; protein RenD | |||||
| * | ? | NC_000913 | = 572411 | 1550 (31.550) | 13 (0.280) | 12/266 | 3.1 | 1.1% | coding (44/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572431 | 863 (18.490) | coding (64/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 570627 = | 4103 (83.510) | 15 (0.340) | 11/254 | 3.2 | 0.40% | intergenic (+199/‑266) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570677 = | 3839 (86.130) | intergenic (+249/‑216) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 315841 = | NA (NA) | 16 (0.340) | 11/272 | 3.5 | NA | noncoding (613/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315858 = | NA (NA) | noncoding (630/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 274419 | NA (NA) | 15 (0.320) | 10/270 | 3.8 | NA | noncoding (731/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274423 | NA (NA) | noncoding (727/1195 nt) | IS5 | repeat region | |||||