New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1345576 =	44 (0.810)	3 (0.060)	3/254	NT	6.6%	coding (1167/1986 nt)	pdeR	cyclic di‑GMP phosphodiesterase PdeR
	?	NC_000913	1345622 =	42 (0.800)					coding (1121/1986 nt)	pdeR	cyclic di‑GMP phosphodiesterase PdeR

ACTTCGCCACGCCAGGTGATTTTCGGTTGATAGTGAATAACCAACTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCC  >  NC_000913/1345436‑1345718                                                                                                                                             |                                                                                                                                               aCTTCGCCACGCCAGGTGATTTTCGGTTGATAGTGAATAACCAACTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAGTACCCGTTGGTTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCg                                                                                                                                              >  2:774036/1‑143 (MQ=255)   ttCGCCACGCCAGGTGATTTTCGGTTGATAGTGAATAACCAACTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAACTTGTCCTCGTc                                                                                                                                            >  1:711549/1‑143 (MQ=255)   ttCGCCACCACAGTTGTTTTTGGGTTGATAGTGAATAATCAACTGATCGTTTTCCAGTGCTTTACGCAACTTGGTATCCGGCCAGAGATATTCAAATATCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTc                                                                                                                                            <  2:949766/143‑1 (MQ=255)   cgcgctggaagcaatggcatcacgaattttgacccgcttacggctcccctttcgcattggtttaattgaagtgtataccagctgttcagtaggtattgcactctctcccgaacatggttcagacagcacggctcttatTCGTc                                                                                                                                            <  1:995647‑M1/5‑1 (MQ=255)               ggTGATTTTCGGTTGATAGTGAATAACCAACTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCg                                                                                                                                >  1:103657/1‑143 (MQ=255)                 tGATTTTCGGTTGATAGTGAGTAACCAACTGATCGTTTTCCAGTGCTTTACTCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCt                                                                                                                              <  2:51865/143‑1 (MQ=255)                    ttttCGGTTGATAGTGAATAACCAACTGATCGTTTTCCAGTGCTTTAAGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCtgtg                                                                                                                           <  2:927680/143‑1 (MQ=255)                           ttGATAGTTAATAACCAACTGATCGTTTTCCAGTGCTTTACGCAATTTGGTATCTAGCGAGGGATATTCAAATACTCGTTGATTCATTTCTCCTCCAAAAACGCGTTTTTGTGCTCGTCCGCCTTCCTTCGCTGTGTACATTg                                                                                                                    <  2:996148/143‑1 (MQ=255)                             gATAGTGAATAACCAACTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGAGTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCt                                                                                                                  <  2:484082/143‑1 (MQ=255)                               tggTGAGTAACCAACTGAGCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCtgt                                                                                                                <  1:773405/141‑1 (MQ=255)                               tAGTGAATAACCAACTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCATAACTTCGCGGGGTAAATGGCtgg                                                                                                                >  1:951288/1‑142 (MQ=255)                                  tGAATAACCAACTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTc                                                                                                             >  2:492968/1‑143 (MQ=255)                                       aaCCAACTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGt                                                                                                        <  1:1041231/143‑1 (MQ=255)                                          acggctccccttctgcattggtttcatggaagtttataccagctgttcagtaggtattgcactctctcccgaacatggttcagacagcacggctattatTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGAc                                                                                                     >  2:826866‑M1/100‑143 (MQ=255)                                             cTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGaa                                                                                                  <  1:240506/143‑1 (MQ=255)                                              ggcgcctttctcgttggtgtaattggagtgtgtaccagctgttgagtaggaattgcccgctctcccgagcatggttcagacagcacggctattatTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGaat                                                                                                 >  1:265687‑M1/96‑143 (MQ=255)                                               gATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGaata                                                                                                <  1:437163/143‑1 (MQ=255)                                               gATCGGTTTGCAGTGCGTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGaata                                                                                                <  2:747537/143‑1 (MQ=255)                                                cccctttcgcattggtttaattgaagtttataccagctgttcagtaggtattgcactctctcccgaacatggttcagacagcacggctattatTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGaataa                                                                                               >  1:349843‑M1/94‑143 (MQ=255)                                                 tCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACCTTGCTGTGCCGGCGTGACGaataat                                                                                              >  1:250585/1‑143 (MQ=255)                                                   gTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAg                                                                                            <  2:1001143/143‑1 (MQ=255)                                                    ttttCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGCATACTAGc                                                                                           >  1:600516/1‑143 (MQ=255)                                                           gTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACA‑TGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGt                                                                                   <  2:103657/143‑1 (MQ=255)                                                              cTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGGTGGTGAGATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCt                                                                                 >  1:240893/1‑143 (MQ=255)                                                               tttACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCGTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGGATAATAGCCGTGCtgtgtg                                                                                >  1:337404/1‑143 (MQ=255)                                                                  aCGCAAGTTGGTATGCAGCCAGAGATATTCAAATACCCGTTGAGTCAGTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAAc                                                                             <  1:217162/143‑1 (MQ=255)                                                                  aCGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGCCGAATAAGAGCCGTGCTGTCTGaaa                                                                             >  2:297821/1‑142 (MQ=255)                                                                  aCGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAAc                                                                             >  2:734219/1‑143 (MQ=255)                                                                        gTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGtt                                                                       >  1:647583/1‑143 (MQ=255)                                                                          tGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTCCTGCGGTAGCTGCTCGAGGTTGTCCCCATGGTCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCg                                                                     <  2:474085/143‑1 (MQ=255)                                                                            ttATCCAGCCAGAGATATTCAAATACCCTTTTATTCATTTCTGGGGTAAAAACGCAAACTTGTCATCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCggg                                                                   <  2:804223/142‑1 (MQ=255)                                                                             tATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACAATGTTCGGga                                                                  >  1:851676/1‑143 (MQ=255)                                                                              aTCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTATCTGAACCATGTTCTGgag                                                                 >  2:551914/1‑143 (MQ=255)                                                                               tCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCTGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGACTAATAGCCATGCTGTATGCACACTGCTCGGgaga                                                                >  2:165534/1‑143 (MQ=255)                                                                               tCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTACGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAGTACTAGCCGTGCGGTCTGGACCGTGGTCGGgaga                                                                >  1:374192/1‑143 (MQ=255)                                                                                 cagccagAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAAGTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGgagaga                                                              <  2:351460/143‑1 (MQ=255)                                                                                 cagccagAGATATTCAAATACACGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGgagaga                                                              <  1:951992/143‑1 (MQ=255)                                                                                      agagATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCa                                                         <  2:94981/143‑1 (MQ=255)                                                                                        agaTATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGCACCATGTTCGGGAGAGAGTGCAAt                                                       >  1:591372/1‑143 (MQ=255)                                                                                                      ccGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGCATAATAGCCGTGCTATCTGAACGATGGTCGGGAGAGAGTGCAATAGCTACTGAAcgcc                                         >  2:151948/1‑140 (MQ=255)                                                                                                        gTTGATTCATTTCTGGGGTAAAGACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTg                                       <  2:201066/143‑1 (MQ=255)                                                                                                         ttGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTgg                                      >  1:866351/1‑143 (MQ=255)                                                                                                                  ttCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATCCCTACTGAACAGCAAGTATAACCtt                             >  2:793636/1‑143 (MQ=255)                                                                                                                     tGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCaa                          >  1:58062/1‑143 (MQ=255)                                                                                                                     tGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCaa                          >  1:1036475/1‑143 (MQ=255)                                                                                                                             aaaCGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACCACTGGTATAAATTTCAATGAAACCa                  >  2:919226/1‑143 (MQ=255)                                                                                                                                  cAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGCCGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTGCATTTAAACAAATGCg             >  2:993525/1‑143 (MQ=255)                                                                                                                                   aaaaTTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTCGTATAAACTTCAATTAAACCAATGCGa            >  1:393630/1‑143 (MQ=255)                                                                                                                                     agttGTCCTCGTCCGCCTTCCGTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGaaa          <  2:776154/141‑1 (MQ=255)                                                                                                                                       ttGTCCTCGTCCGCCTGCCTTCGCTGTGTACATTGCTGTGGCGGCGTGACGAATAAGAGCCGGGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAgg        <  1:275858/143‑1 (MQ=255)                                                                                                                                       ttGGCCTCGCCCGCCTGCCTTCCCTGGGTACCTTGCTGTGTCGGCGTGACGTATAATAGCCGTGCTGTCTGAACCTTGTTCGGGAGAGAGTGCAATACGTACTGAACAGCTGGGATAAACTTCAATTAAACCAATGCGAAAgg        <  2:144791/143‑1 (MQ=255)                                                                                                                                          tCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACCTCAATTAAACCAACGCGAAAGGGGa     >  2:382626/1‑143 (MQ=255)                                                                                                                                            cTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCGTGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGaaaggggcgc   <  1:651146‑M1/142‑4 (MQ=255)                                                                                                                                             TCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGATGGGATAAGCTGCAACGCAACGAATTCGAAAGGGGAGcc  <  2:795444‑M1/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                               ACTTCGCCACGCCAGGTGATTTTCGGTTGATAGTGAATAACCAACTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCC  >  NC_000913/1345436‑1345718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.