New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1345576 =	44 (0.810)	3 (0.060)	3/254	NT	6.6%	coding (1167/1986 nt)	pdeR	cyclic di‑GMP phosphodiesterase PdeR
	?	NC_000913	1345622 =	42 (0.800)					coding (1121/1986 nt)	pdeR	cyclic di‑GMP phosphodiesterase PdeR

CTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGATGCCATTGCTTCCAGCGCG  >  NC_000913/1345480‑1345759                                                                                                                                               |                                                                                                                                          cTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGaa                                                                                                                                           <  1:240506/143‑1 (MQ=255)  ggcgcctttctcgttggtgtaattggagtgtgtaccagctgttgagtaggaattgcccgctctcccgagcatggttcagacagcacggctattatTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGaat                                                                                                                                          >  1:265687‑M1/96‑143 (MQ=255)   gATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGaata                                                                                                                                         <  1:437163/143‑1 (MQ=255)   gATCGGTTTGCAGTGCGTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGaata                                                                                                                                         <  2:747537/143‑1 (MQ=255)    cccctttcgcattggtttaattgaagtttataccagctgttcagtaggtattgcactctctcccgaacatggttcagacagcacggctattatTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGaataa                                                                                                                                        >  1:349843‑M1/94‑143 (MQ=255)     tCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACCTTGCTGTGCCGGCGTGACGaataat                                                                                                                                       >  1:250585/1‑143 (MQ=255)       gTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAg                                                                                                                                     <  2:1001143/143‑1 (MQ=255)        ttttCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGCATACTAGc                                                                                                                                    >  1:600516/1‑143 (MQ=255)               gTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACA‑TGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGt                                                                                                                            <  2:103657/143‑1 (MQ=255)                  cTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGGTGGTGAGATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCt                                                                                                                          >  1:240893/1‑143 (MQ=255)                   tttACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCGTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGGATAATAGCCGTGCtgtgtg                                                                                                                         >  1:337404/1‑143 (MQ=255)                      aCGCAAGTTGGTATGCAGCCAGAGATATTCAAATACCCGTTGAGTCAGTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAAc                                                                                                                      <  1:217162/143‑1 (MQ=255)                      aCGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGCCGAATAAGAGCCGTGCTGTCTGaaa                                                                                                                      >  2:297821/1‑142 (MQ=255)                      aCGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAAc                                                                                                                      >  2:734219/1‑143 (MQ=255)                            gTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGtt                                                                                                                >  1:647583/1‑143 (MQ=255)                              tGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTCCTGCGGTAGCTGCTCGAGGTTGTCCCCATGGTCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCg                                                                                                              <  2:474085/143‑1 (MQ=255)                                ttATCCAGCCAGAGATATTCAAATACCCTTTTATTCATTTCTGGGGTAAAAACGCAAACTTGTCATCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCggg                                                                                                            <  2:804223/142‑1 (MQ=255)                                 tATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACAATGTTCGGga                                                                                                           >  1:851676/1‑143 (MQ=255)                                  aTCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTATCTGAACCATGTTCTGgag                                                                                                          >  2:551914/1‑143 (MQ=255)                                   tCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCTGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGACTAATAGCCATGCTGTATGCACACTGCTCGGgaga                                                                                                         >  2:165534/1‑143 (MQ=255)                                   tCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTACGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAGTACTAGCCGTGCGGTCTGGACCGTGGTCGGgaga                                                                                                         >  1:374192/1‑143 (MQ=255)                                     cagccagAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAAGTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGgagaga                                                                                                       <  2:351460/143‑1 (MQ=255)                                     cagccagAGATATTCAAATACACGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGgagaga                                                                                                       <  1:951992/143‑1 (MQ=255)                                          agagATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCa                                                                                                  <  2:94981/143‑1 (MQ=255)                                            agaTATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGCACCATGTTCGGGAGAGAGTGCAAt                                                                                                >  1:591372/1‑143 (MQ=255)                                                          ccGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGCATAATAGCCGTGCTATCTGAACGATGGTCGGGAGAGAGTGCAATAGCTACTGAAcgcc                                                                                  >  2:151948/1‑140 (MQ=255)                                                            gTTGATTCATTTCTGGGGTAAAGACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTg                                                                                <  2:201066/143‑1 (MQ=255)                                                             ttGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTgg                                                                               >  1:866351/1‑143 (MQ=255)                                                                      ttCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATCCCTACTGAACAGCAAGTATAACCtt                                                                      >  2:793636/1‑143 (MQ=255)                                                                         tGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCaa                                                                   >  1:58062/1‑143 (MQ=255)                                                                         tGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCaa                                                                   >  1:1036475/1‑143 (MQ=255)                                                                                 aaaCGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACCACTGGTATAAATTTCAATGAAACCa                                                           >  2:919226/1‑143 (MQ=255)                                                                                      cAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGCCGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTGCATTTAAACAAATGCg                                                      >  2:993525/1‑143 (MQ=255)                                                                                       aaaaTTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTCGTATAAACTTCAATTAAACCAATGCGa                                                     >  1:393630/1‑143 (MQ=255)                                                                                         agttGTCCTCGTCCGCCTTCCGTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGaaa                                                   <  2:776154/141‑1 (MQ=255)                                                                                           ttGTCCTCGTCCGCCTGCCTTCGCTGTGTACATTGCTGTGGCGGCGTGACGAATAAGAGCCGGGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAgg                                                 <  1:275858/143‑1 (MQ=255)                                                                                           ttGGCCTCGCCCGCCTGCCTTCCCTGGGTACCTTGCTGTGTCGGCGTGACGTATAATAGCCGTGCTGTCTGAACCTTGTTCGGGAGAGAGTGCAATACGTACTGAACAGCTGGGATAAACTTCAATTAAACCAATGCGAAAgg                                                 <  2:144791/143‑1 (MQ=255)                                                                                             ttattcgtcacgccgacacagcaatgtacacagcgaaggaaggcggacgaATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAgggg                                               >  1:349843‑M2/51‑143 (MQ=255)                                                                                              tCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACCTCAATTAAACCAACGCGAAAGGGGa                                              >  2:382626/1‑143 (MQ=255)                                                                                               attcgtcacgccgacacagcaatgtacacagcgaaggaaggcggacgaATAATAGCCGTGCTGTCTGAACCATGCTCGGGAGAGCGGGCAATTCCTACTCAACAGCTGGTACACACTCCAATTACACCAACGAgaaaggcgcc                                             >  1:265687‑M2/49‑139 (MQ=255)                                                                                                cTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCGTGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGaaaggggcgc                                            <  1:651146‑M1/142‑4 (MQ=255)                                                                                                 TCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGATGGGATAAGCTGCAACGCAACGAATTCGAAAGGGGAGcc                                           <  2:795444‑M1/143‑1 (MQ=255)                                                                                                   tTCCGCTTGCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCTTGTTCGGACGTGTGGATGATTTCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGt                                         >  1:546709‑M1/2‑143 (MQ=255)                                                                                                   gtcacgccgacacagcaatgtacacagcgaaggaaggcggacgaATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCCATGAAACCAATGCAGAAGGGGAGCCGt                                         >  2:826866‑M2/45‑143 (MQ=255)                                                                                                    TCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGa                                                     <  2:269337‑M1/130‑1 (MQ=255)                                                                                                    TCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGa                                                     >  1:269337‑M1/1‑130 (MQ=255)                                                                                                         cttccttcGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCgg                                   <  2:866351/143‑1 (MQ=255)                                                                                                         cctccttcGCTCTGTACATTGCTCTGTCTGCGACACGAATAATAGCCGTGCTATCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTAGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCgg                                   <  2:250585/141‑1 (MQ=255)                                                                                                               tcGCTGTGGACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTTGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCaaa                             <  1:258136/143‑1 (MQ=255)                                                                                                                       tACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGa                     >  1:1018654/1‑143 (MQ=255)                                                                                                                        aCATTGCTGCGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTTGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGAt                    <  1:151802/143‑1 (MQ=255)                                                                                                                          aTTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTAAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGATGc                  <  1:960525/143‑1 (MQ=255)                                                                                                                            tccTGTGTCGGCGAGACGAGTAATAGACGTGCTGTCTGAGCCGTGTTCGGGAGAGAGTGCAATACCTACGGACGAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGATGCCa                <  2:454263/141‑1 (MQ=255)                                                                                                                              cTGTGTCGGCGTGACGAACAATCTCCGTCCTTTCTGAACCATGTTCGGTAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGATGCCAtt              <  1:308571/143‑1 (MQ=255)                                                                                                                               tgtgTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCACTACCTACTGTACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGATGCCATTg             <  1:956136/143‑1 (MQ=255)                                                                                                                                    cGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTACGCGGGTCAAACTTCGTGATGCCATCGCTTcc        >  1:820863/1‑143 (MQ=255)                                                                                                                                         tGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGACAAAATTCGTGATGCCATTGCGTCCAgcgc   >  2:931998/1‑143 (MQ=255)                                                                                                                                         tGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGGATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGATGCCATTGCTTCCAgcgc   >  1:96663/1‑143 (MQ=255)                                                                                                                                          gacgaATAAGAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATACACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGATGCCATTGCTTCCAgcgcg  <  1:995647‑M2/138‑1 (MQ=255)                                                                                                                                               |                                                                                                                                          CTGATCGTTTTCCAGTGCTTTACGCAAGTTGGTATCCAGCCAGAGATATTCAAATACCCGTTGATTCATTTCTGGGGTAAAAACGCAAAATTGTCCTCGTCCGCCTTCCTTCGCTGTGTACATTGCTGTGTCGGCGTGACGAATAATAGCCGTGCTGTCTGAACCATGTTCGGGAGAGAGTGCAATACCTACTGAACAGCTGGTATAAACTTCAATTAAACCAATGCGAAAGGGGAGCCGTAAGCGGGTCAAAATTCGTGATGCCATTGCTTCCAGCGCG  >  NC_000913/1345480‑1345759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.