| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2729630 = | NA (NA) | 9 (0.170) | 8/254 | NT | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA |
| ? | NC_000913 | 2729652 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA | |||||
GTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAA > NC_000913/2729488‑2729708 | gTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCATAAATCAAAACGCGTGAAGGCCGTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCGAAGTACGCTTCTTTAAGGTAGGGAGGTGATCCa > 1:348031/1‑143 (MQ=14) tGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGCGCACTGCAAAGTACGCTTCTTTAAGGTGAGGAGGTGATCCaa > 2:616617/1‑143 (MQ=255) cTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGc > 1:638892/1‑143 (MQ=255) cTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGc > 1:736244/1‑143 (MQ=255) cTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGc > 2:737379/1‑143 (MQ=40) cTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGc > 1:356609/1‑143 (MQ=255) ttCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTCGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAg < 1:539286/143‑1 (MQ=255) tAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCAATCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCATACAATCTGGGTGAGCACCGCAAAGTACGCTTCTTTAAGTTAAGGAGGTGATCCACCCTCAGGTTct > 1:381413/1‑142 (MQ=14) aaTAGAGAGCGAACGGCCTTATTCTCTTCAGCCTCACGCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAAGCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTccc < 2:808101/143‑1 (MQ=255) aaTAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTccc < 1:896683/143‑1 (MQ=40) gAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAACGTACGCTTCTTTGAGGTAAGGTGGTTGTCCAACCGCAGGTTGCCCTACGGTTAc > 1:52630/1‑143 (MQ=14) aCGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCt > 1:601697/1‑143 (MQ=255) cGGCCTGATTCTCTTCAGCCTCACGCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCtt < 1:232152/143‑1 (MQ=255) cttagcctctTCGGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTGCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTa < 2:683596/137‑1 (MQ=255) ttATTCTCTTCAGACTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTAc < 1:586540/143‑1 (MQ=255) gtATTCTCTGCAGCCGCACTCCCAACGCGGAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCGTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTAc < 1:478921/142‑1 (MQ=255) tATTCTCTTCAGCCTCACTCCCACCGCGGATTCAGCACGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACg > 2:590315/1‑143 (MQ=14) aTTCTCGTCAGCCGCGCTCCCAACGCGTAAGCGCCTTGCTATTCACTTTGCATCAGACAGTCTGTGTGGGCACTGCGAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGa < 2:187419/143‑1 (MQ=11) ttCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTATGAGCACTGCAAAGTACGCTTCTTTAAGGTACGGCGGGGATCCAACCGCCGGTTCCCCTCCCGGTACCCTCTTACgcc > 2:789253/1‑141 (MQ=14) tctcTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGGCAATCTGTGTGAGCACTGCATAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCGGGTTCCCCTACGGTTACCTTGTTACGACt > 1:348917/1‑143 (MQ=255) ctctTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTATGCGCCCTGCACAGTACGCTTCTTTAAGATAAAGAGGGGATCCAACCGCAGGTTCCCCTACGGCTCCCTTGTTACGACtt > 1:957466/1‑143 (MQ=14) tctTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTCCCTTGTTACGACTTc > 2:1020390/1‑143 (MQ=255) ctTCAGCTTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGGGCAACGCAGTGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCa < 2:377078/143‑1 (MQ=14) ttCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCAc > 1:1034645/1‑143 (MQ=40) tCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCCGACAATCTGTGTGCGCACTGCACCGTACGCTTCTTTCAGGTAAGAAGGTGATCCAACCGCAGGTTTCCATAAGAATACATTGTTACGACTTCAcc > 1:551493/1‑143 (MQ=14) agcccgcACTGCCAACGCGTAGGCGCCTTGCTATTCACTCTTCATCAGACAAGCTGTGTGAGCACGGCAAAGTACGCGTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCAccc < 2:743556/137‑1 (MQ=14) ccTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGATCCCCTACGGTTACCTTGTTACGACTTCACCCCAg > 2:685432/1‑143 (MQ=255) cTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACTCCAGt > 2:280257/1‑143 (MQ=255) cccAACGCGTCAACGCCTTGCTATTCCCTTTTCATCCCACAATCTGTGTGCGCACTGCAAAGTACGCTTCTTGAACGCAAGGATGTGATCCACCCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGaa < 1:519484/143‑1 (MQ=14) cccAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGaa < 2:1065853/143‑1 (MQ=255) aCGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACTTTGTTACGACTTCACCCCAGTCCTGAATcac > 2:576357/1‑143 (MQ=255) gcgTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACaa < 1:459397/143‑1 (MQ=40) cgTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACaaa < 2:601697/143‑1 (MQ=40) tAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGt < 1:530332/143‑1 (MQ=255) taaCGCCTTGCTATTCGCTTTTCATCTGACAATCGGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTCATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTg < 2:108468/142‑1 (MQ=255) caaCGCCTTGCTATTCACTTTTCATCAGCCAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTg < 1:636019/142‑1 (MQ=255) caaCGCCTTGCTATTCACCTTTCATCAGACAATCGGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTg < 1:68282/142‑1 (MQ=255) aaaCGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTg < 2:1054837/143‑1 (MQ=39) aaaCGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAAATTCACCTACAGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTg > 1:309754/1‑143 (MQ=255) aaCGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGAgg > 1:31676/1‑143 (MQ=255) cTTGCTGTTCACTTTTCATCAGACAATCTGTGTGAGCAATGCAAAGTACGCTTCTTGAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAgc < 2:780523/143‑1 (MQ=255) tGCTATTCTCTTTTCATCTGACCATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAgcgc < 2:826575/143‑1 (MQ=255) tGCTATTCACTTTTCCTCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAgcgc < 2:907766/143‑1 (MQ=38) tGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTTCTAAgcgc > 1:273977/1‑143 (MQ=255) gCTATTCACTTTTCATCCGACATTCTGTGTTAGCACTGCAAAGTACGCTTCTTTAAGGTAAGTAGGTGATCCAACCGCAGGTTCCCCGACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTTGTAAGCGcc < 2:882242/143‑1 (MQ=11) aTTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTc > 2:323180/1‑143 (MQ=34) tCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCATGCTAAGACTTCACCCCAGTCATGAATCACAACGTGGTAAGCGCCCTccc > 2:755888/1‑143 (MQ=255) cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCg > 1:513594/1‑143 (MQ=32) cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCg > 1:756889/1‑143 (MQ=32) aCTTTTCATAAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTACGGTAAGGAGGTGATCCCACCACAGGTTCCACTACGGTTAACTCGGTACGACTTCACGCCAGTCGTAAATACCAAAGTGCTGAGCCCCCTCCCGa > 2:639759/1‑143 (MQ=11) cTTTTCATCAGTCGATCTGGTTGAGCACTGCATAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGaa < 2:44694/143‑1 (MQ=11) | GTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAA > NC_000913/2729488‑2729708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |