mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 25.0% | 80.4 / 30.0 | 68 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572325 | 1374 (42.300) | 12 (0.400) | 9/234 | 1.9 | 0.92% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 1333 (44.550) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 287515 = | 39 (1.200) | 4 (0.130) | 4/242 | 3.6 | 9.5% | coding (727/1611 nt) | yagH | CP4‑6 prophage; putative xylosidase/arabinosidase |
| ? | NC_000913 | 287548 = | 39 (1.260) | coding (760/1611 nt) | yagH | CP4‑6 prophage; putative xylosidase/arabinosidase | |||||
| * | ? | NC_000913 | = 134766 | 17 (0.520) | 3 (0.100) | 3/232 | 3.9 | 16.0% | intergenic (+16/+22) | yacL/speD | UPF0231 family protein YacL/S‑adenosylmethionine decarboxylase proenzyme |
| ? | NC_000913 | = 134772 | 16 (0.540) | intergenic (+22/+16) | yacL/speD | UPF0231 family protein YacL/S‑adenosylmethionine decarboxylase proenzyme | |||||
| * | ? | NC_000913 | = 3938367 | 37 (1.140) | 3 (0.100) | 3/236 | 4.0 | 7.9% | coding (141/993 nt) | rbsR | DNA‑binding transcriptional dual regulator RbsR |
| ? | NC_000913 | = 3938374 | 36 (1.190) | coding (148/993 nt) | rbsR | DNA‑binding transcriptional dual regulator RbsR | |||||