New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	3 (0.200)	7 (0.540)	7/232	NT	75.1%	coding (305/630 nt)	ycfK	e14 prophage; protein StfP
	?	NC_000913	= 1209602	2 (0.150)					pseudogene (54/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment

CCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA  >  NC_000913/1207667‑1207947                                                                                                                                           |                                                                                                                                               ccAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCCAATGGCACTGTGCAAACGGCTCTCGAAAACCTAAGTTTGGGACAAGGctct                                                                                                                                            >  2:42872‑M1/1‑139 (MQ=255)          atctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaattcccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                                   <  2:288194‑M1/29‑1 (MQ=255)            ctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGTGAGAAGGAGCAAAACTCAATgc                                                                                                                                 <  2:210877‑M1/31‑1 (MQ=255)                        catttgttgatacgcgtacatagacaataagcatgttaaatccccctggaaaaagcaggaatgatgccatttgcttgttatctcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACAGCTAc                                                                                                                     >  1:42146‑M1/101‑143 (MQ=255)                           ttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGTCGCAAAACTCACTTCAGCAACGGCTACAtt                                                                                                                  <  1:36072‑M1/46‑1 (MQ=255)                                        cACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAGTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt                                                                                                     <  2:279802/143‑1 (MQ=255)                                        cACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt                                                                                                     >  1:261114/1‑143 (MQ=255)                                         aCTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcca                                                                                                    <  2:153905‑M1/143‑45 (MQ=255)                                            tagccaataagcatgttaaatccccctggtaaaagaaggaatgatgccattagcttgttatttcttcattatcagaaacgTTGGTTTGGAGGAAGGAGCAAAACTCAATGAAGGAACGCCTAGACTAGGACGCACAggtttaa                                                                                                 <  2:300437‑M1/63‑3 (MQ=255)                                             agccaataagcatgttaaatccccctggtacaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgCTGGTTTGGCCGAAGGAGCAAAACTCAATCCAGCAACTGCTACATTCGGACGCACCGCTTTCAt                                                                                                <  1:37189‑M1/64‑1 (MQ=255)                                               cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAACACCTTGGGTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTAGCATAg                                                                                              >  2:58214/1‑143 (MQ=25)                                                              aatccccctggtaaaagcaggaatgatgccatttgcttgttacttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTATCATAGCTATACAGGTAATGa                                                                               <  1:303774‑M1/81‑1 (MQ=255)                                                                   ccctggtaagagcagggatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                          >  1:203417‑M1/58‑143 (MQ=255)                                                                   ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACAGGTTATGATtggt                                                                          <  1:263839‑M1/86‑1 (MQ=255)                                                                    gAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGAAAAAGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctatgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgca                                                                         >  2:265716‑M1/1‑72 (MQ=255)                                                                           aaatcatgaatgattccatttgcttgttatttcttttttttcataaacgTTTGTTTGGTAGAAGTAGCAATATTCAATGTAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                  >  1:173268‑M1/50‑143 (MQ=255)                                                                                aggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                             <  1:299667‑M1/99‑1 (MQ=255)                                                                                       aaaGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgc                                                      <  2:153580‑M1/143‑91 (MQ=255)                                                                                           catttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                                  <  2:109996‑M1/110‑1 (MQ=255)                                                                                             tttgcttgtgttttcttcattttcctaaacgTTGGTTTGGTAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCa                                                >  2:326‑M1/32‑143 (MQ=255)                                                                                             gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgccttttctgctgagca                                                >  1:168866‑M1/1‑47 (MQ=255)                                                                                                ggCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaaccggctggctgaaatgcaatggtgccgctttttctgctgacgaata                                             >  1:36057‑M1/1‑44 (MQ=255)                                                                                                           aaCGGCTCGCGAAAACCTTGGTTTGGGAGAAGGctctgcagtacccgttggtgcaaatggctgtgggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactgg                                  <  1:220730‑M1/143‑111 (MQ=255)                                                                                                            ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGc                                 <  1:170005‑M1/127‑1 (MQ=255)                                                                                                            ccgGTTCTCGAAAACCTTGGTTTGGGAGAAGCctctgtattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggc                                 <  2:144644‑M1/142‑112 (MQ=255)                                                                                                                                   ggggggaGGAGCAGAACTCAGTTCAGCAAAGGTTACATTAGGAGGCTCCGGTTTCATAGCGATACCGGTTATGATTGGTGGTAGTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggg          <  2:244581/137‑1 (MQ=255)                                                                                                                                         aGGctctgcataacctgttggaggcccggttccgcggcctgcagccactccgccaacaggctggctgaaatacaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctg    <  1:98102‑M1/143‑141 (MQ=255)                                                                                                                                           GAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGa  <  2:110937‑M1/143‑1 (MQ=255)                                                                                                                                           |                                                                                                                                               CCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA  >  NC_000913/1207667‑1207947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.