New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	3 (0.200)	7 (0.540)	7/232	NT	75.1%	coding (305/630 nt)	ycfK	e14 prophage; protein StfP
	?	NC_000913	= 1209602	2 (0.150)					pseudogene (54/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment

CAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT  >  NC_000913/1209463‑1209741                                                                                                                                             |                                                                                                                                            cAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGTATTTCAGCCAGCCTGTTGGCGGAGTGGCTGCAGGCC‑GCGGAACCGGGCCTCCAACAGGTTATGCAGAGcct                                                                                                                                          <  1:98102‑M2/143‑4 (MQ=255)                tCGGATAAGCCCTTGCCAGGTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACg                                                                                                                           <  1:134601/143‑1 (MQ=255)                              gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATACAGAGgcttctcccaaaccaaggttttcgagaaccgg                                                                                                             <  2:144644‑M2/143‑33 (MQ=255)                               ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCCACAGCCATTTG‑CACCAACGGGTACTGCAGAGccttctcccaaaccaaggttttcgcgagccgtt                                                                                                            <  1:220730‑M2/143‑34 (MQ=255)                                          tATTCGTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCGGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcc                                                                                                 >  1:36057‑M2/1‑99 (MQ=255)                                             tgctcagcAGAAAAGGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatc                                                                                              >  1:168866‑M2/4‑96 (MQ=255)                                                   gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgcttt                                                                                        <  2:153580‑M2/143‑54 (MQ=255)                                                                      tGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCATAGccttctcccaaaccaaggttttcgagagcctttttcacagtgccatccgatttgatatcgccaaacggattc                                                                     >  2:265716‑M2/1‑71 (MQ=255)                                                                                ccagcgTGGTGGCCGAGGGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGGAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                                           <  2:254623/143‑1 (MQ=255)                                                                                                 tGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagt                                          <  2:153905‑M2/143‑100 (MQ=255)                                                                                                           gacccGGAACCTGTACACCAACAGGTAATGCAGAGCCTTCTCGCCAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATc                                 <  2:127619/139‑1 (MQ=255)                                                                                                                                          agagccttgtcccaaacttaggttttcgagagccgtttgcacagtgccattggatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg  >  2:42872‑M2/1‑4 (MQ=255)                                                                                                                                             |                                                                                                                                            CAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT  >  NC_000913/1209463‑1209741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.