New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1436950 =	48 (0.840)	7 (0.120)	7/262	NT	10.6%	intergenic (‑57/‑171)	ompN/micC	outer membrane porin N/small regulatory RNA MicC
	?	NC_000913	= 1458936	70 (1.230)					coding (673/789 nt)	paaG	putative ring 1,2‑epoxyphenylacetyl‑CoA isomerase (oxepin‑CoA forming)

TTATTTTGTATGTATTATCTTCGATACATTCACCAGACTTATTATCATTTCAGAGGAATTATTTGATTAAGGTTTTACTTAAGGCGTAACAAATGATATTTATCGGCTAACTGAACTTCTCCTTTAGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1437081‑1436950 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGAGCGTATTGGTTTCAGCGCTATTTATCGCTTGCTTGATAAGTCCAAGACCAAATGTCGGTTGTGTCGCCAGATGCCGTGCCAGCTGTTGCGCGGTATCTGCCAGCGTTTCATCATCAACAACCTGCCAGATCATCC  <  NC_000913/1458936‑1458799                                                                                                                                                                                                                                                                                TTATTTTGTATGTAGTATCTTCGATACATTCACCAGACTTATTATCATTTCAGAGGAATTATTTGATTAAGGTTTTACTTAAGGCGTAACAAATGATATTTATCGGCTAACTGAACTTCTCCTTTAGGATGTCGAGCGTATTG                                                                                                                                 <  1:687324/143‑1                                                                   TTAAGGTTTTACTTAAGGCGTAACAAATGATATTTATCGGCTAACTGAACTTCTCCTTTAGGATGTCGAGCGTATTGGTTTCAGCGCTATTTATCGCTTGCTTGATAAGTCCAAGACCAAATGTCGGTTGTGTCGCCAGATGC                                                               >  1:449216/1‑143                                                                    TAAGGTTTTACTTAAGGCGGAACAAATGATATTTATCGGCTAACTGAACTTCTCCGTTAGGATGTCGAGCGTATTGGTTTCAGCGCTATTTATCGCTTGCTTGATAAGTCCAAGACCAAATGTCGGTTGTGTCGCCAGATGCC                                                              <  1:360961/143‑1                                                                       GGTTTTACTTAAGGCGTAACAAATGATATTTACCGGCTAACTGAACTTCTCCTTTAGGATGTCGAGCGTATTGGTTCCAGCGCTACTTATCGCTTGCTTGATAAGTCCAAGACCAAATGTCGGTTGTGTCGCCAGATGCCGTG                                                           <  1:349494/143‑1                                                                           TTACTTAAGGCGTAACAAATGATCTTTATCGGTGACGTTAGCGTCGCCTTTAGGATGTCGAGCGTATTGGTTTCAGCGCTATTTATCGCTTGCTTGATAAGTCCAAGACCAAATGTCGGTTGTGTCGCCAGATGCCGTGCCAG                                                       <  1:765210/143‑1                                                                                               GATATCTATCGGCTAACTGAACTTCTCCTTTAGGATGTCGAGCGTATTGGTTTCAGCGCTATTTATCGCTTGCTTGATAAGTCCAAGACCAAATGTCGGTTGTGTCGCCAGATGCCGTGCCAGCTGTTGCGCGGTATCTGCCA                                   <  2:36605/143‑1                                                                                                                     TTCTCCTTTAGGATGTCGAGCGTATTGGTTTCAGCGCTATTTATCGCTTGCTTGCTAAGTCCAAGACCAAATGTCGGTTGTGTCGCCAGATGCCGTGCCAGCTGTTGCGCGGTAGCTGCCAGCGTTTCATACTCAACACCCct             >  2:85434/1‑141                                                                                                                                GATGTCGAGCGTATTGGTTTCAGCGCTATTTATCGCTTGCTTGATAAGTCCAAGACCAAATGTCGGTTGTGTCGCCAGATGCCGTGCCAGCTGTTGCGCGGTATCTGCCAGCGTTTCATCATCAACAACCTGCCAGATCATCC  >  1:35932/1‑143                                                                                                                                                                                                                                                                                TTATTTTGTATGTATTATCTTCGATACATTCACCAGACTTATTATCATTTCAGAGGAATTATTTGATTAAGGTTTTACTTAAGGCGTAACAAATGATATTTATCGGCTAACTGAACTTCTCCTTTAGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1437081‑1436950 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGAGCGTATTGGTTTCAGCGCTATTTATCGCTTGCTTGATAAGTCCAAGACCAAATGTCGGTTGTGTCGCCAGATGCCGTGCCAGCTGTTGCGCGGTATCTGCCAGCGTTTCATCATCAACAACCTGCCAGATCATCC  <  NC_000913/1458936‑1458799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.