New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 93541	50 (0.870)	3 (0.050)	3/258	NT	5.8%	coding (376/1488 nt)	murE	UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
	?	NC_000913	= 93563	48 (0.860)					coding (398/1488 nt)	murE	UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase

GCACGGCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCGGGGCTGG  >  NC_000913/93402‑93682                                                                                                                                            |                                                                                                                                              gCACGGCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGt                                                                                                                                            >  2:133513/1‑143 (MQ=255)  cACGGCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGtt                                                                                                                                           >  1:390554/1‑143 (MQ=255)    cGGCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACGCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTATCCAGCTGTTgg                                                                                                                                         >  2:931500/1‑143 (MQ=255)    cGGCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCGGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTgg                                                                                                                                         <  1:537679/143‑1 (MQ=255)      gCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACCACTACCCAGCTGCTGgcg                                                                                                                                       >  2:627859/1‑143 (MQ=255)              gTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACAACTACCCAGCTGTTGGCGCAGTGGAg                                                                                                                               >  2:212099/1‑143 (MQ=255)                cATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGcc                                                                                                                             <  1:1104908/143‑1 (MQ=255)                cATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGcc                                                                                                                             <  1:561862/143‑1 (MQ=255)                  tctatctCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCTTGATCCTTCTTACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCagttggctccactgcgccaa                                                                                                                           <  1:41138‑M1/143‑21 (MQ=255)                  tctatctCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTTGGCGTAACCGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTTGAGCCaa                                                                                                                           >  2:528704/1‑143 (MQ=255)                    tatctCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAAcc                                                                                                                         >  1:480460/1‑142 (MQ=255)                        tcAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGCCTCGTGGGCGTAACGGGCACCAACGGCACAACCACGACTACCCAGCTGTTGGCGCAACGGAGCCAACTCCtt                                                                                                                     >  2:207507/1‑143 (MQ=255)                          agccagcTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTATTACCATGAACCCACTGACAATTTACGTCGCGTGGGCGTAAGGGGCGCCGACGGCAAAACCACGACTACCCAGCCGATTGCGCAGTGGGACCAACCGCATgg                                                                                                                   >  2:543938/1‑143 (MQ=255)                              agcTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGaa                                                                                                               <  1:967771/143‑1 (MQ=255)                                cTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGCGGAGCAAACTGATTGGAGaaaa                                                                                                             >  1:1132410/1‑142 (MQ=255)                                     cgctcttttATCTGCTCTGGCTGACCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAgcg                                                                                                        <  1:950984/137‑1 (MQ=255)                                     cGAGCGTCTATCTGCACTGGCGGCCCGCTTTTACCATGAACCCGCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAgcg                                                                                                        <  2:764911/143‑1 (MQ=255)                                           tttATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTGCTCGGCTGCTGGCGCAGTGGAGCCAACTGCATGGCGAAATAAGAGCGGTaa                                                                                                  >  1:308445/1‑143 (MQ=255)                                            ttATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAAt                                                                                                 <  1:266661/143‑1 (MQ=255)                                                cTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCCGCTGTTGGCGCAGTGGAGCCACATGCTTGGCGCAATCAGCGCGGTCGTGGGc                                                                                             >  1:589029/1‑143 (MQ=255)                                                                  ttttCCATGCACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCGCCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCctg                                                                           <  2:522090/143‑1 (MQ=255)                                                                  tttACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCctg                                                                           <  1:654790/143‑1 (MQ=255)                                                                   ggacgaTGAACCCTCTGACAATGTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCctgc                                                                          <  1:54520/138‑1 (MQ=255)                                                                    tACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGGAATGGGCACCGTTGGTAACGGCctgct                                                                         >  1:395381/1‑143 (MQ=255)                                                                        aTGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTgggg                                                                     >  1:725057/1‑143 (MQ=255)                                                                        aTGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCCTGGCGAAATCAGCGCGGTAATGGGCACCGGTGGTCACGGCCTGCTgggg                                                                     >  2:56177/1‑143 (MQ=255)                                                                          gAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGaa                                                                   >  1:392162/1‑143 (MQ=255)                                                                           aaCCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAAGCAGCGCGGTAAAGGGCACCGGTGGTAACGGCCTGCTGGGGaac                                                                  >  2:1128353/1‑142 (MQ=255)                                                                           aaCCCTCCGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTGGGCGCAGTGGAGCCAACTGCTTGGCGACATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGaaa                                                                  <  1:583480/143‑1 (MQ=255)                                                                               ctctGACAATTTACGTCTCGTGGGCGTATCGGGCACCAACGGCAAAACCACGACTACCCAGCTGGTGGCGCAGTGGCGCCAACTGCTTGGCGAAATCAGCGCGGTAATTGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGa                                                              <  1:476500/143‑1 (MQ=255)                                                                                tctGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCagttggctccactgcgccaacagctgggtagtcgtggttt                                                                                                       <  1:841049‑M1/101‑41 (MQ=255)                                                                                tctGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCagttggctccactgcgccaacagctgggtagtcgtggttt                                                                                                       >  2:841049‑M1/1‑61 (MQ=255)                                                                                     cagtttACGTCTCGTGGGCGTAACGGGCACCGGCGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGa                                                        <  2:621080/140‑1 (MQ=255)                                                                                           tcggcgcGTGGGCGTAAAGGCCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGGGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGaaa                                                  <  2:1035591/137‑1 (MQ=255)                                                                                           aCGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGATGGAAACGGCCTGCTGGGGAAAGTGATACAGACAGaaa                                                  >  1:1091178/1‑143 (MQ=255)                                                                                                       cGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGGAACGGCCTGCGGGGGAAAGTGATGCCGACAGGAGATACAACCggct                                      >  2:106415/1‑141 (MQ=255)                                                                                                       cGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTATTGGCGCAGTGAAGCCAACGGCTTGGCGACATCAGCGCGGTAATGGGCACCGCTGGTAACGCCCCGCTGGGGCAAGAGATCCCGACAGCAAGAACAACGGGtt                                      >  2:405478/1‑143 (MQ=255)                                                                                                        ggcaCGGGCACCAACGTCAAGACCACGTCTGCGCAGCTGTTGGCGCAGTTGAGCCAACTGCCTGGCGAACGCAGCGCGGTAATGGGCACCGTCGGTAACGGCCTGCTGGGGATAGTGATCCCGACAGAAAATACAACCGGTTc                                     <  2:615010/140‑1 (MQ=255)                                                                                                          aaCGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCgg                                   <  2:488599/143‑1 (MQ=255)                                                                                                          aaCGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCgg                                   <  1:640779/143‑1 (MQ=255)                                                                                                          aaCGAGCACCAACGGCAAACCCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACGGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCgg                                   <  1:7274/143‑1 (MQ=255)                                                                                                             gggCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATCCAACCGGTTCGGCAg                                >  1:335672/1‑143 (MQ=255)                                                                                                              ggCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGGAAGTGACCCCGACAGAAAATATAACCGGGTCGGGAgg                               >  2:572245/1‑142 (MQ=255)                                                                                                                 aCCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGa                            >  1:1109997/1‑143 (MQ=255)                                                                                                                 aCCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGGAATGGGCACCGTTGGTAACGGCCTGCTGGGGAGAGTGGTCCCGACAGGAAATACAACCCGCTCGGCAGGCgg                            >  2:145852/1‑142 (MQ=255)                                                                                                                  ccACCGGCACGACCACGGCGACCCAGCTGTGGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGAt                           <  2:653699/143‑1 (MQ=255)                                                                                                                   cAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGAt                                                             >  2:132200/1‑108 (MQ=255)                                                                                                                   cAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGAt                                                             <  1:132200/108‑1 (MQ=255)                                                                                                                   cAACGGCAAAACCACGACTACCCAGCTGTAGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGAGCCCGGCGGCAGATACAACCGGTTCGGCAGTCGATg                          >  1:618629/1‑143 (MQ=255)                                                                                                                   cAACGGCAAAACCACGACTACCCAGCGGGTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATg                          <  1:126447/143‑1 (MQ=255)                                                                                                                      cGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTc                       <  1:212099/143‑1 (MQ=255)                                                                                                                         cgccaCCACGCCTGCCCAGCTGTGGGCGCAGTGGAGCTAACTGCTTGGCGAAAGCAGCGCGGTAATGGGCACCGTGTGTAACGGCCTGCGGGGGAAAGTGATCCCGACAGAACATACAGCCGATTCGGCAGTCGATGTTCAGc                    <  2:564474/139‑1 (MQ=255)                                                                                                                         cAACACCACGCTTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGc                    <  2:392162/143‑1 (MQ=255)                                                                                                                           aaaCCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTgctgggtagtcgtggttttgccgttggtgcccgttacgcccacgagacgtaaattgtcaga                                                            <  1:841049‑M2/101‑62 (MQ=255)                                                                                                                           aaaCCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTgctgggtagtcgtggttttgccgttggtgcccgttacgcccacgagacgtaaattgtcaga                                                            >  2:841049‑M2/1‑40 (MQ=255)                                                                                                                                    cTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGTGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCg         <  1:496041/143‑1 (MQ=255)                                                                                                                                    cTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCg         <  1:462400/143‑1 (MQ=255)                                                                                                                                       cacAGCTGTAGGCGCAGAGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCgggg      <  1:90737/141‑1 (MQ=255)                                                                                                                                           gCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCGGGGCtgg  >  1:761082/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                              GCACGGCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCGGGGCTGG  >  NC_000913/93402‑93682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.