New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 93541	50 (0.870)	3 (0.050)	3/258	NT	5.8%	coding (376/1488 nt)	murE	UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
	?	NC_000913	= 93563	48 (0.860)					coding (398/1488 nt)	murE	UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase

TCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCGGGGCTGGTGGATCAGGGCGCGACG  >  NC_000913/93425‑93699                                                                                                                                           |                                                                                                                                         tcAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGCCTCGTGGGCGTAACGGGCACCAACGGCACAACCACGACTACCCAGCTGTTGGCGCAACGGAGCCAACTCCtt                                                                                                                                      >  2:207507/1‑143 (MQ=255)   agccagcTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTATTACCATGAACCCACTGACAATTTACGTCGCGTGGGCGTAAGGGGCGCCGACGGCAAAACCACGACTACCCAGCCGATTGCGCAGTGGGACCAACCGCATgg                                                                                                                                    >  2:543938/1‑143 (MQ=255)       agcTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGaa                                                                                                                                <  1:967771/143‑1 (MQ=255)         cTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGCGGAGCAAACTGATTGGAGaaaa                                                                                                                              >  1:1132410/1‑142 (MQ=255)              cgctcttttATCTGCTCTGGCTGACCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAgcg                                                                                                                         <  1:950984/137‑1 (MQ=255)              cGAGCGTCTATCTGCACTGGCGGCCCGCTTTTACCATGAACCCGCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAgcg                                                                                                                         <  2:764911/143‑1 (MQ=255)                    tttATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTGCTCGGCTGCTGGCGCAGTGGAGCCAACTGCATGGCGAAATAAGAGCGGTaa                                                                                                                   >  1:308445/1‑143 (MQ=255)                     ttATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAAt                                                                                                                  <  1:266661/143‑1 (MQ=255)                         cTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCCGCTGTTGGCGCAGTGGAGCCACATGCTTGGCGCAATCAGCGCGGTCGTGGGc                                                                                                              >  1:589029/1‑143 (MQ=255)                                           ttttCCATGCACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCGCCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCctg                                                                                            <  2:522090/143‑1 (MQ=255)                                           tttACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCctg                                                                                            <  1:654790/143‑1 (MQ=255)                                            ggacgaTGAACCCTCTGACAATGTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCctgc                                                                                           <  1:54520/138‑1 (MQ=255)                                             tACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGGAATGGGCACCGTTGGTAACGGCctgct                                                                                          >  1:395381/1‑143 (MQ=255)                                                 aTGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTgggg                                                                                      >  1:725057/1‑143 (MQ=255)                                                 aTGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCCTGGCGAAATCAGCGCGGTAATGGGCACCGGTGGTCACGGCCTGCTgggg                                                                                      >  2:56177/1‑143 (MQ=255)                                                   gAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGaa                                                                                    >  1:392162/1‑143 (MQ=255)                                                    aaCCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAAGCAGCGCGGTAAAGGGCACCGGTGGTAACGGCCTGCTGGGGaac                                                                                   >  2:1128353/1‑142 (MQ=255)                                                    aaCCCTCCGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTGGGCGCAGTGGAGCCAACTGCTTGGCGACATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGaaa                                                                                   <  1:583480/143‑1 (MQ=255)                                                        ctctGACAATTTACGTCTCGTGGGCGTATCGGGCACCAACGGCAAAACCACGACTACCCAGCTGGTGGCGCAGTGGCGCCAACTGCTTGGCGAAATCAGCGCGGTAATTGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGa                                                                               <  1:476500/143‑1 (MQ=255)                                                              cagtttACGTCTCGTGGGCGTAACGGGCACCGGCGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGa                                                                         <  2:621080/140‑1 (MQ=255)                                                                    tcggcgcGTGGGCGTAAAGGCCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGGGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGaaa                                                                   <  2:1035591/137‑1 (MQ=255)                                                                    aCGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGATGGAAACGGCCTGCTGGGGAAAGTGATACAGACAGaaa                                                                   >  1:1091178/1‑143 (MQ=255)                                                                                cGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGGAACGGCCTGCGGGGGAAAGTGATGCCGACAGGAGATACAACCggct                                                       >  2:106415/1‑141 (MQ=255)                                                                                cGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTATTGGCGCAGTGAAGCCAACGGCTTGGCGACATCAGCGCGGTAATGGGCACCGCTGGTAACGCCCCGCTGGGGCAAGAGATCCCGACAGCAAGAACAACGGGtt                                                       >  2:405478/1‑143 (MQ=255)                                                                                 ggcaCGGGCACCAACGTCAAGACCACGTCTGCGCAGCTGTTGGCGCAGTTGAGCCAACTGCCTGGCGAACGCAGCGCGGTAATGGGCACCGTCGGTAACGGCCTGCTGGGGATAGTGATCCCGACAGAAAATACAACCGGTTc                                                      <  2:615010/140‑1 (MQ=255)                                                                                   aaCGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCgg                                                    <  1:640779/143‑1 (MQ=255)                                                                                   aaCGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCgg                                                    <  2:488599/143‑1 (MQ=255)                                                                                   aaCGAGCACCAACGGCAAACCCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACGGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCgg                                                    <  1:7274/143‑1 (MQ=255)                                                                                      gggCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATCCAACCGGTTCGGCAg                                                 >  1:335672/1‑143 (MQ=255)                                                                                       ggCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGGAAGTGACCCCGACAGAAAATATAACCGGGTCGGGAgg                                                >  2:572245/1‑142 (MQ=255)                                                                                          aCCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGa                                             >  1:1109997/1‑143 (MQ=255)                                                                                          aCCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGGAATGGGCACCGTTGGTAACGGCCTGCTGGGGAGAGTGGTCCCGACAGGAAATACAACCCGCTCGGCAGGCgg                                             >  2:145852/1‑142 (MQ=255)                                                                                           ccACCGGCACGACCACGGCGACCCAGCTGTGGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGAt                                            <  2:653699/143‑1 (MQ=255)                                                                                            cAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGAt                                                                              <  1:132200/108‑1 (MQ=255)                                                                                            cAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGAt                                                                              >  2:132200/1‑108 (MQ=255)                                                                                            cAACGGCAAAACCACGACTACCCAGCTGTAGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGAGCCCGGCGGCAGATACAACCGGTTCGGCAGTCGATg                                           >  1:618629/1‑143 (MQ=255)                                                                                            cAACGGCAAAACCACGACTACCCAGCGGGTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATg                                           <  1:126447/143‑1 (MQ=255)                                                                                               cGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTc                                        <  1:212099/143‑1 (MQ=255)                                                                                                  cgccaCCACGCCTGCCCAGCTGTGGGCGCAGTGGAGCTAACTGCTTGGCGAAAGCAGCGCGGTAATGGGCACCGTGTGTAACGGCCTGCGGGGGAAAGTGATCCCGACAGAACATACAGCCGATTCGGCAGTCGATGTTCAGc                                     <  2:564474/139‑1 (MQ=255)                                                                                                  cAACACCACGCTTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGc                                     <  2:392162/143‑1 (MQ=255)                                                                                                    aaaCCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTgctgggtagtcgtggttttgccgttggtgcccgttacgcccacgagacgtaaattgtcaga                                                                             <  1:841049‑M2/101‑62 (MQ=255)                                                                                                    aaaCCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTgctgggtagtcgtggttttgccgttggtgcccgttacgcccacgagacgtaaattgtcaga                                                                             >  2:841049‑M2/1‑40 (MQ=255)                                                                                                             cTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGTGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCg                          <  1:496041/143‑1 (MQ=255)                                                                                                             cTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCg                          <  1:462400/143‑1 (MQ=255)                                                                                                                cacAGCTGTAGGCGCAGAGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCgggg                       <  1:90737/141‑1 (MQ=255)                                                                                                                    gccgTTGGCGCAGTGGAGCCAACTGCTGGGCGAAATCGGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCGGGGCtgg                   <  1:106347/140‑1 (MQ=255)                                                                                                                    gCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCGGGGCtgg                   >  1:761082/1‑143 (MQ=255)                                                                                                                        ttGGCGCAGTGGAGCCAACTgctgggtagtcgtggttttgccgttggtgcccgttacgcccacgagacgtaaattgtaagaaggatcaaggtaaaagcggcccgccagtgcagataaacgctcgttgagctggctgagataga               <  1:41138‑M2/143‑124 (MQ=255)                                                                                                                         tGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCGGGGCTGGTGGAt              <  2:725057/143‑1 (MQ=255)                                                                                                                         gcccgcTGTGGAGCCAACTGCGTGGCGAAATCAGCGCGGTCACGGGCACCGTTGGCAACGGCCTGCTGGGGAAAGTGATCCCTACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCGGGGCTGGTGGAt              <  1:56177/140‑1 (MQ=255)                                                                                                                               actGGAGCCAACTCCTTGTCGAAATCGGCGCGGTAATGGTCACCGTTGGTAACGGCCTGCTGGGGAAAGGGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGTCGGTGCTGGTGGATCAGGgc        <  2:223773/141‑1 (MQ=255)                                                                                                                                gTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTGATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTAATCCCGACAGAAAATACAACCGGGGCGGCGGTCGATGTTCGGCATGAGCTGGGGGGGGTGGTGGCTCAGGgcg       >  1:1016026/1‑143 (MQ=255)                                                                                                                                     gCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCGGGGCTGGTGGATCAGGGCGCGACg  <  1:833094/143‑1 (MQ=255)                                                                                                                                           |                                                                                                                                         TCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCTGTTGGCGCAGTGGAGCCAACTGCTTGGCGAAATCAGCGCGGTAATGGGCACCGTTGGTAACGGCCTGCTGGGGAAAGTGATCCCGACAGAAAATACAACCGGTTCGGCAGTCGATGTTCAGCATGAGCTGGCGGGGCTGGTGGATCAGGGCGCGACG  >  NC_000913/93425‑93699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.