New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1026664 =	46 (0.800)	3 (0.060)	3/250	NT	6.8%	coding (352/459 nt)	mgsA	methylglyoxal synthase
	?	NC_000913	1026694 =	39 (0.720)					coding (322/459 nt)	mgsA	methylglyoxal synthase

GTAAGAAACAGGTGGCGTTTGCCACCTGTGCAATATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATGCGCCAA  >  NC_000913/1026522‑1026795                                                                                                                                               |                                                                                                                                    gTAAGAAACAGGTGGCGTTTGCCACCTGTGCAATATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGTAGTCTGCCGTTGCCACGCtggt                                                                                                                                     >  1:375003/1‑143 (MQ=255) ccaaGAAACCGGTGGCGTTCGCCACCTGTGCAATATTACTCCACACGGTCCGTGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTtggt                                                                                                                                     <  1:2771/141‑1 (MQ=255)   cgcgatgttgagtggcccaatggggggtgaccagcaggttggcgcattgatctcagaagggaaaattgatgtattgattttcttctgggatccactaaatgccgtgccgcacgatcctgacgtgaaagccttgctgcgtcTgg                                                                                                                                   >  1:303998‑M1/141‑143 (MQ=255)   cgcgatgttgagcggcccaatggggggtgaccagcaggttggcgcattgatctcagaagggaaaattgatgtattgattttcttctgggatccactaaatgccgtgccgcacgatcctgacgtgaaagccttgctgcgtcTgg                                                                                                                                   >  2:579881‑M1/141‑143 (MQ=255)   aaGAAACAGGTGGCGTTTGCTACCTGTGCAATCTTACTTCAGACGGTCCGCGAGATAACGGTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTtggtgg                                                                                                                                   <  2:162108/143‑1 (MQ=255)   aaGAAACAGGTGGCGTTTGCCGCCTGTGCAATATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTtggtgg                                                                                                                                   <  2:858546/143‑1 (MQ=255)           ggTGGCGTTTGCCACCTGTGCAATATTACTTCAGACGGGCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGa                                                                                                                           <  2:523909/143‑1 (MQ=255)            gTGGCGGTTGCCAGCTGTGCAATATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATAGCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGaa                                                                                                                          <  1:1095064/143‑1 (MQ=255)             tGGCGGTGGCCGCCTGGGCAATCTTACTTCAGACGGGTCGCGAGATAACGCTTATAGTCGGGGATCCGAATTTCGACCGCGTCGTTGCAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGCAt                                                                                                                         <  2:648560/143‑1 (MQ=255)               gCGTTTGCCACCTGTGCAATATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTAGGAGGCGACCGGAATGt                                                                                                                       >  1:656003/1‑143 (MQ=255)                 ggttGCCACCTGTGCAATCTTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTc                                                                                                                     <  1:552374/141‑1 (MQ=255)                        aCCTGTGCAATATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGc                                                                                                                                  >  1:288076/1‑123 (MQ=255)                        aCCTGTGCAATATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGc                                                                                                                                  <  2:288076/123‑1 (MQ=255)                          cTGTGCAATATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAGTTTTGGGGCTGGCTTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCGATACCGTc                                                                                                            >  2:849736/1‑143 (MQ=255)                            gtgCAATACTACTTCAGACGGCCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGc                                                                                                          <  1:573668/143‑1 (MQ=255)                                aaTATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGa                                                                                                      <  2:950796/143‑1 (MQ=255)                                 atgttAGTTCCGACGGGCCGCGAGCTCACGCTGATAAGCGGGGATCAGAATATCGACGGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGAc                                                                                                     <  2:126182/140‑1 (MQ=255)                                    ttACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACgca                                                                                                  >  1:74622/1‑143 (MQ=255)                                    gcaggttggcgcattgacctcagaagggaaaattgatgtattgaatttcttctgggatccactaaatgccgtgccgcacgatcctgacgtgaaagccttgctgcgtcTGGCGACCGGAATGTTCCATACCGTCGCCAGACgca                                                                                                  >  1:881999‑M1/108‑143 (MQ=255)                                         tCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAg                                                                                             <  1:1088695/143‑1 (MQ=255)                                            gACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATAACGACGCCAGACgcagcagagct                                                                                          >  2:341916/1‑138 (MQ=255)                                                   cgctAGATGTCGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTGGAAATGCGGCTAGTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGt                                                                                   <  2:980652/143‑1 (MQ=255)                                                   cgcgAGATAACGCTGATAATCGGGGAACAGAATATTGACCGCGTCGGTGAAATGCGGCGACTGGAATATGTGGTCTGCCGTGGCCGCGTTGGTTGAGGCCGGAATGTTCCATACCGTCCCCAGGCGCAGCAAGGCTTTCACGt                                                                                   >  2:1050397/1‑143 (MQ=255)                                                   cgcgAGATAACGCGTATACTCGGGTATCAGAATATCGACCGCGTCCTTGAAAGTCGGCGACTGGATTATCAAGTCTGCCGTTCCCACGTTAGTGACGACCGCTATCTTCCATACCGTCGCCAGACGCAGCAATGCTTTCTCGt                                                                                   <  2:987409/143‑1 (MQ=255)                                                         agaagggaaaattgatgtattgattttcttctgggatccactaaatgccgtgccgcacgatcctgacgtgaaagccttgctgcgtcTGGCGACCGGAATGTTCCATACCGTCGCCAg                                                                                                       >  2:857069‑M1/87‑117 (MQ=255)                                                         agaagggaaaattgatgtattgattttcttctgggatccactaaatgccgtgccgcacgatcctgacgtgaaagccttgctgcgtcTGGCGACCGGAATGTTCCATACCGTCGCCAg                                                                                                       <  1:857069‑M1/31‑1 (MQ=255)                                                          caaCGCCGAGAAGCGGGAGGCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATc                                                                            <  1:753114/142‑1 (MQ=255)                                                              gCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGACGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTACATACCGACGCCAGACGCAGCAAGGCCGACACGACAGGACCGTGc                                                                        >  2:684671/1‑143 (MQ=255)                                                               cTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGcg                                                                       <  1:712362/143‑1 (MQ=255)                                                                     aTCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGCCTGGATTATGAAACCTGCCGTTGCCACGTTGCTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCGGCAAGGCTTTCAGGCCACGACCGGCcggcacgg                                                                 >  2:972618/1‑143 (MQ=255)                                                                      tCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGGATGTGCCATACCGTCGCCAGACGCCGCCAGGCTTTCACTTCAGGATCGTGcggcccggc                                                                >  1:1083713/1‑143 (MQ=255)                                                                       cGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGcggcacggca                                                               <  1:1104347/143‑1 (MQ=255)                                                                         gggATAACAATATCGACCGCGGCGTGGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCAtt                                                             <  1:161755/143‑1 (MQ=255)                                                                           gATCAGAAGATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTa                                                           <  1:676307/143‑1 (MQ=255)                                                                            agcAGAAGATCGTCCGCGTCGTTGAAATGCGGCGATTGGATGATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCTGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAg                                                          <  1:499694/141‑1 (MQ=255)                                                                              cAGAATATCGACCGCGTCGTTGAAATGCGGCGACTTGATTATGAAGTCTGCCGTTGCCACGTGGGTGGCGACCGGAAGGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTg                                                        <  1:849736/143‑1 (MQ=255)                                                                                   tatCGACGGCGGCGTTGAAATGCGGCGATGGGATTATGAAGTCTGGCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATcc                                                   <  1:1112470/143‑1 (MQ=255)                                                                                   tatCGACCGCGTCGTTGAAATGTGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATcc                                                   <  2:1053671/143‑1 (MQ=255)                                                                                   tatCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATcc                                                   <  1:149293/143‑1 (MQ=255)                                                                                       gACCGCGTCGTTGAAATGCGGCGGCTGGATTCTGACGTCTGCCGTGGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCaga                                               <  2:532144/143‑1 (MQ=255)                                                                                       gACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCaga                                               <  1:1043140/143‑1 (MQ=255)                                                                                            cgtcggTGAAATGCGGCGAGTGGACTATGAAGCCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGaaa                                          <  1:674433/143‑1 (MQ=255)                                                                                            cggcgtGGAAATGCGGGGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTGGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGaaa                                          <  2:64554/140‑1 (MQ=255)                                                                                               cgtTGAAGTGCGGCGACTGGATTATGAAGTCTGCCGTGGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATc                                       <  2:807507/143‑1 (MQ=255)                                                                                                gtTGAAATGCGGCGACTGGATTAAGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGGCAGGATCGTGCGGCACGGCATTTAGTGGCGCCCAGAAGAAAAGCa                                      >  2:469611/1‑143 (MQ=255)                                                                                                 ttGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCaa                                     <  1:665711/143‑1 (MQ=255)                                                                                                     aaTGCGGCGACTGGAGTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTCCGGCACGGCCTTTAGTGACCCCCAGACGGAAACCAATACa                                 >  2:953858/1‑143 (MQ=255)                                                                                                             gACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAAtttt                         <  1:793571/143‑1 (MQ=255)                                                                                                                  gtttATGAAGTGTGCCGTTGCCACGTTGGGGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGGGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCtt                    <  2:84106/141‑1 (MQ=255)                                                                                                                  gATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAGGGCTTTCACGTCAGGATCGTGCGGCACGGCTGTTAGTGGATCCCAGAAGAAGATTAATACATCAAttttagctt                    >  1:750528/1‑138 (MQ=255)                                                                                                                    ttATGAAGTCTGCCGTTGCCACGTTGGTCACCACCGAAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTCTCACGACAGAAACGTACGGCACGGCATCTAATGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCt                  >  2:1051165/1‑143 (MQ=255)                                                                                                                     tATGACGTCTGCCGTTGCCTCGTGGGTTGCGAGCGGATTGTCCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGCCGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTg                 <  2:344446/143‑1 (MQ=255)                                                                                                                         aaGTCTGGCGTTGCCACGGTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGAt             <  1:149005/143‑1 (MQ=255)                                                                                                                            tCTGCCGTGGCCACGTTGGGGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCaa          <  1:1036388/143‑1 (MQ=255)                                                                                                                              tGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATg        >  1:397353/1‑143 (MQ=255)                                                                                                                                ccGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCATCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCTAGTAGCGGATCCCTGAAGGAAGTCAATACATCAATTTTCCCTTCTGCGATCAATgcg      >  1:154055/1‑143 (MQ=255)                                                                                                                                    cgCCACGTTGGTGGCGACCGGAATGTTCCATACCGATGCGACACGGAGCGAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATGCGCCaa  <  2:1097732/142‑1 (MQ=255)                                                                                                                                               |                                                                                                                                    GTAAGAAACAGGTGGCGTTTGCCACCTGTGCAATATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATGCGCCAA  >  NC_000913/1026522‑1026795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.