New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1026664 =	46 (0.800)	3 (0.060)	3/250	NT	6.8%	coding (352/459 nt)	mgsA	methylglyoxal synthase
	?	NC_000913	1026694 =	39 (0.720)					coding (322/459 nt)	mgsA	methylglyoxal synthase

AATATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATGCGCCAACCTGCTGGTCACCCCCCATTGGGCCACTCAACATCGCG  >  NC_000913/1026553‑1026833                                                                                                                                              |                                                                                                                                            aaTATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGa                                                                                                                                            <  2:950796/143‑1 (MQ=255)  atgttAGTTCCGACGGGCCGCGAGCTCACGCTGATAAGCGGGGATCAGAATATCGACGGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGAc                                                                                                                                           <  2:126182/140‑1 (MQ=255)     ttACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACgca                                                                                                                                        >  1:74622/1‑143 (MQ=255)     gcaggttggcgcattgacctcagaagggaaaattgatgtattgaatttcttctgggatccactaaatgccgtgccgcacgatcctgacgtgaaagccttgctgcgtcTGGCGACCGGAATGTTCCATACCGTCGCCAGACgca                                                                                                                                        >  1:881999‑M1/108‑143 (MQ=255)          tCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAg                                                                                                                                   <  1:1088695/143‑1 (MQ=255)             gACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATAACGACGCCAGACgcagcagagct                                                                                                                                >  2:341916/1‑138 (MQ=255)                    cgctAGATGTCGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTGGAAATGCGGCTAGTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGt                                                                                                                         <  2:980652/143‑1 (MQ=255)                    cgcgAGATAACGCTGATAATCGGGGAACAGAATATTGACCGCGTCGGTGAAATGCGGCGACTGGAATATGTGGTCTGCCGTGGCCGCGTTGGTTGAGGCCGGAATGTTCCATACCGTCCCCAGGCGCAGCAAGGCTTTCACGt                                                                                                                         >  2:1050397/1‑143 (MQ=255)                    cgcgAGATAACGCGTATACTCGGGTATCAGAATATCGACCGCGTCCTTGAAAGTCGGCGACTGGATTATCAAGTCTGCCGTTCCCACGTTAGTGACGACCGCTATCTTCCATACCGTCGCCAGACGCAGCAATGCTTTCTCGt                                                                                                                         <  2:987409/143‑1 (MQ=255)                          agaagggaaaattgatgtattgattttcttctgggatccactaaatgccgtgccgcacgatcctgacgtgaaagccttgctgcgtcTGGCGACCGGAATGTTCCATACCGTCGCCAg                                                                                                                                             >  2:857069‑M1/87‑117 (MQ=255)                          agaagggaaaattgatgtattgattttcttctgggatccactaaatgccgtgccgcacgatcctgacgtgaaagccttgctgcgtcTGGCGACCGGAATGTTCCATACCGTCGCCAg                                                                                                                                             <  1:857069‑M1/31‑1 (MQ=255)                           caaCGCCGAGAAGCGGGAGGCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATc                                                                                                                  <  1:753114/142‑1 (MQ=255)                               gCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGACGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTACATACCGACGCCAGACGCAGCAAGGCCGACACGACAGGACCGTGc                                                                                                              >  2:684671/1‑143 (MQ=255)                                cTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGcg                                                                                                             <  1:712362/143‑1 (MQ=255)                                      aTCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGCCTGGATTATGAAACCTGCCGTTGCCACGTTGCTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCGGCAAGGCTTTCAGGCCACGACCGGCcggcacgg                                                                                                       >  2:972618/1‑143 (MQ=255)                                       tCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGGATGTGCCATACCGTCGCCAGACGCCGCCAGGCTTTCACTTCAGGATCGTGcggcccggc                                                                                                      >  1:1083713/1‑143 (MQ=255)                                        cGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGcggcacggca                                                                                                     <  1:1104347/143‑1 (MQ=255)                                          gggATAACAATATCGACCGCGGCGTGGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCAtt                                                                                                   <  1:161755/143‑1 (MQ=255)                                            gATCAGAAGATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTa                                                                                                 <  1:676307/143‑1 (MQ=255)                                             agcAGAAGATCGTCCGCGTCGTTGAAATGCGGCGATTGGATGATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCTGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAg                                                                                                <  1:499694/141‑1 (MQ=255)                                               cAGAATATCGACCGCGTCGTTGAAATGCGGCGACTTGATTATGAAGTCTGCCGTTGCCACGTGGGTGGCGACCGGAAGGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTg                                                                                              <  1:849736/143‑1 (MQ=255)                                                    tatCGACGGCGGCGTTGAAATGCGGCGATGGGATTATGAAGTCTGGCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATcc                                                                                         <  1:1112470/143‑1 (MQ=255)                                                    tatCGACCGCGTCGTTGAAATGTGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATcc                                                                                         <  2:1053671/143‑1 (MQ=255)                                                    tatCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATcc                                                                                         <  1:149293/143‑1 (MQ=255)                                                        gACCGCGTCGTTGAAATGCGGCGGCTGGATTCTGACGTCTGCCGTGGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCaga                                                                                     <  2:532144/143‑1 (MQ=255)                                                        gACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCaga                                                                                     <  1:1043140/143‑1 (MQ=255)                                                             cgtcggTGAAATGCGGCGAGTGGACTATGAAGCCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGaaa                                                                                <  1:674433/143‑1 (MQ=255)                                                             cggcgtGGAAATGCGGGGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTGGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGaaa                                                                                <  2:64554/140‑1 (MQ=255)                                                                cgtTGAAGTGCGGCGACTGGATTATGAAGTCTGCCGTGGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATc                                                                             <  2:807507/143‑1 (MQ=255)                                                                 gtTGAAATGCGGCGACTGGATTAAGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGGCAGGATCGTGCGGCACGGCATTTAGTGGCGCCCAGAAGAAAAGCa                                                                            >  2:469611/1‑143 (MQ=255)                                                                  ttGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCaa                                                                           <  1:665711/143‑1 (MQ=255)                                                                      aaTGCGGCGACTGGAGTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTCCGGCACGGCCTTTAGTGACCCCCAGACGGAAACCAATACa                                                                       >  2:953858/1‑143 (MQ=255)                                                                              gACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAAtttt                                                               <  1:793571/143‑1 (MQ=255)                                                                                   gtttATGAAGTGTGCCGTTGCCACGTTGGGGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGGGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCtt                                                          <  2:84106/141‑1 (MQ=255)                                                                                   gATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAGGGCTTTCACGTCAGGATCGTGCGGCACGGCTGTTAGTGGATCCCAGAAGAAGATTAATACATCAAttttagctt                                                          >  1:750528/1‑138 (MQ=255)                                                                                     ttATGAAGTCTGCCGTTGCCACGTTGGTCACCACCGAAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTCTCACGACAGAAACGTACGGCACGGCATCTAATGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCt                                                        >  2:1051165/1‑143 (MQ=255)                                                                                      tATGACGTCTGCCGTTGCCTCGTGGGTTGCGAGCGGATTGTCCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGCCGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTg                                                       <  2:344446/143‑1 (MQ=255)                                                                                          aaGTCTGGCGTTGCCACGGTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGAt                                                   <  1:149005/143‑1 (MQ=255)                                                                                             tCTGCCGTGGCCACGTTGGGGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCaa                                                <  1:1036388/143‑1 (MQ=255)                                                                                               tGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATg                                              >  1:397353/1‑143 (MQ=255)                                                                                                 ccGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCATCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCTAGTAGCGGATCCCTGAAGGAAGTCAATACATCAATTTTCCCTTCTGCGATCAATgcg                                            >  1:154055/1‑143 (MQ=255)                                                                                                     cgCCACGTTGGTGGCGACCGGAATGTTCCATACCGATGCGACACGGAGCGAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATGCGCCaa                                        <  2:1097732/142‑1 (MQ=255)                                                                                                          tgcgtctggcgacggtatggaacattccggtcgccaGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAATTCAATACATCAATTTTCCCTTCTGAGGTCAATGCGCCAACctgc                                   >  1:881999‑M2/37‑143 (MQ=255)                                                                                                               ctggcgacggtatggaacattccggtcgccaGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCt                                                        >  2:857069‑M2/32‑117 (MQ=255)                                                                                                               ctggcgacggtatggaacattccggtcgccaGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCt                                                        <  1:857069‑M2/86‑1 (MQ=255)                                                                                                                 GGCGAGCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATGCGCCAACCTGCTGGTCAc                            >  2:845991‑M1/1‑143 (MQ=255)                                                                                                                 GGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATGCGCCACCCTGCTGGCCAc                            <  2:36957‑M1/143‑1 (MQ=255)                                                                                                                   CGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATGCGCCAACCTGCTGGTCAccc                          >  2:194151‑M1/1‑143 (MQ=255)                                                                                                                           ctGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCCCGTCAGGATCGTGCGGCACGGCATTTAGTGGACCCCAGAAGAAAATCAATACATCAACTTTCCCTTCTGAGATCAATGCGCCAACCTGCTGGTCACCCCCCATTgg                  <  1:1036580/142‑1 (MQ=255)                                                                                                                           aTGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATGCGCCAACCTGCTGGTCACCCCCCATTgg                  <  2:786592/143‑1 (MQ=255)                                                                                                                                           ccaGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATGCGCCAACCTGCTGGTCACCCCCCATTGGGCCGCTCAACATcgcg  >  2:579881‑M2/4‑143 (MQ=255)                                                                                                                                           ccaGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATGCGCCAACCTGCTGGTCACCCCCCATTGGGCCACTCAACATcgcg  >  1:303998‑M2/4‑143 (MQ=255)                                                                                                                                              |                                                                                                                                            AATATTACTTCAGACGGTCCGCGAGATAACGCTGATAATCGGGGATCAGAATATCGACCGCGTCGTTGAAATGCGGCGACTGGATTATGAAGTCTGCCGTTGCCACGTTGGTGGCGACCGGAATGTTCCATACCGTCGCCAGACGCAGCAAGGCTTTCACGTCAGGATCGTGCGGCACGGCATTTAGTGGATCCCAGAAGAAAATCAATACATCAATTTTCCCTTCTGAGATCAATGCGCCAACCTGCTGGTCACCCCCCATTGGGCCACTCAACATCGCG  >  NC_000913/1026553‑1026833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.