mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3857685 | 66 (1.150) | 3 (0.060) | 3/248 | NT | 4.7% | coding (720/1494 nt) | yidJ | putative sulfatase/phosphatase |
| ? | NC_000913 | = 3857715 | 61 (1.130) | coding (690/1494 nt) | yidJ | putative sulfatase/phosphatase | |||||
| * | ? | NC_000913 | 3660233 = | 75 (1.310) | 3 (0.050) | 3/256 | NT | 4.4% | coding (1002/1158 nt) | mdtE | multidrug efflux pump membrane fusion protein MdtE |
| ? | NC_000913 | 3660285 = | 58 (1.050) | coding (1054/1158 nt) | mdtE | multidrug efflux pump membrane fusion protein MdtE | |||||
| * | ? | NC_000913 | 2177585 = | 69 (1.210) | 3 (0.050) | 3/256 | NT | 4.4% | coding (980/1053 nt) | fbaB | fructose‑bisphosphate aldolase class I |
| ? | NC_000913 | 2177615 = | 62 (1.120) | coding (950/1053 nt) | fbaB | fructose‑bisphosphate aldolase class I | |||||
| * | ? | NC_000913 | = 1440443 | 84 (1.470) | 3 (0.060) | 3/250 | NT | 3.3% | coding (342/3525 nt) | ydbK | putative pyruvate‑flavodoxin oxidoreductase |
| ? | NC_000913 | = 1440464 | 98 (1.810) | coding (321/3525 nt) | ydbK | putative pyruvate‑flavodoxin oxidoreductase | |||||
| * | ? | NC_000913 | 1439023 = | 87 (1.520) | 4 (0.070) | 3/256 | NT | 4.6% | coding (1762/3525 nt) | ydbK | putative pyruvate‑flavodoxin oxidoreductase |
| ? | NC_000913 | 1439064 = | 82 (1.480) | coding (1721/3525 nt) | ydbK | putative pyruvate‑flavodoxin oxidoreductase | |||||
| * | ? | NC_000913 | = 572411 | 732 (12.790) | 10 (0.180) | 8/250 | NT | 1.9% | coding (44/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572431 | 364 (6.720) | coding (64/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 572316 = | 2429 (42.430) | 32 (0.610) | 10/244 | NT | 1.5% | intergenic (+65/‑52) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | 572345 = | 1897 (35.880) | intergenic (+94/‑23) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 570695 = | 2942 (51.390) | 35 (0.650) | 18/250 | NT | 1.3% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 2709 (50.000) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||