| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1785522 | 29 (0.670) | 3 (0.070) | 3/256 | NT | 9.2% | coding (1591/2379 nt) | ppsA | phosphoenolpyruvate synthetase |
| ? | NC_000913 | = 1785546 | 31 (0.730) | coding (1567/2379 nt) | ppsA | phosphoenolpyruvate synthetase | |||||
GCGCTTCGGATAAAACGCGGCACCCAGCGTCGCGATCCCTTCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGTTCATCATCACTTTCAAC > NC_000913/1785391‑1785664 | gcgcTTCGGATAAAACGCGGCACCCAGCGTCGCGATCCCTTCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTTATCGTCAAACTCAAGCa > 1:749831/1‑143 (MQ=255) ttCGGATAAAACGCGGCACCCAGCGTCGCGATCCCTTCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCCAAACCTTTCATCATCTCGCGGACTTCCCTTTGCAACTGCGGCTCCTGACCCTCcaacccacccactcc > 2:215927‑M1/1‑128 (MQ=255) ggATAAACCGCGGCACCCACCGTCGCGATCCCTTCAGTCAGACGACCAACGTAACATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGcgcg < 1:364321/143‑1 (MQ=255) tAAAACGCGGCACCCAGCGTCGCGATCCCTTCAGTCAGACGACCAACGCACAGACTAAGGTCAGAATCAACACCTTTCAGCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCgtgg < 1:839090/143‑1 (MQ=255) aCGCGGCACCCAGCGTCGCGATCCCTTCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTAATGATGGTCAAACTCGAGCAGTGCGCGTGGGTGg < 1:220669‑M2/143‑2 (MQ=255) ccggCACCCAGCGTCGCGATCCCTTCTTTCAGACCCCCAACGTAAAATTCACGCGGAGCATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCGAGCAGTGCGCGTGGGTGgac > 2:469493‑M2/2‑140 (MQ=255) ggCACCCAGCGTCGCGATCCCTTCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGc > 1:227949/1‑143 (MQ=255) gcgcgCTCCCGTCAGTCAGACGACCAACGTACAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACgg < 2:807670/142‑1 (MQ=255) aTCCCTTCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACCCACGCAGTGCGCGTAGGAGGACGCCAATCATGCGGAtgct > 2:401364/1‑141 (MQ=255) ttCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATaa < 1:533864/143‑1 (MQ=255) ttCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGAGTTCGTTTTGCAACTGCGGTTCCTGCTCGTCAAACTCAAGCAGTGCGCGTGGTCGGACGCCCATCACCCGGTTGAGGATaa > 2:524237/1‑143 (MQ=255) acgacCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGAc < 1:809955/143‑1 (MQ=255) cAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCAGCTCGCGGCTTTCGTGCTGCAACTGCGGCTCCTCATCGTCAACCTCCACCAGTGCTCGTCGGTGGACGCCAACCATAGGGCTGACCATAAAGTCGCGAcgcccc > 2:468761/1‑140 (MQ=255) gTAAAATCCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCACTCATACGGTTGCTGATAAATTTCAGAAGTGCAAgga > 1:124971/1‑142 (MQ=255) aaaaTTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCcacccacgcgcactgcttgag < 2:15432‑M1/94‑22 (MQ=255) aaaaTTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCcacccacgcgcactgcttgag > 1:15432‑M1/1‑73 (MQ=255) aaTTCACGCGTAGAATCAAAACCTTTCATCAGCTCGCGGATTTCGTTGTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCAc < 1:585222/143‑1 (MQ=255) ttCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGCTGATAAATTCCAGACGCGCAAGGCCCACGc > 1:577791/1‑143 (MQ=255) gagaATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCttcgttc < 1:379519/143‑1 (MQ=255) tCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTACCATATCGTCAAACTCAAGCAGTGCGCGTGGGTCAGCTCTTATCATAAAATACTTGTTTATTTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTag > 1:753445/1‑143 (MQ=255) aCCTTTCATCATCGCGCCGATTTCGTTTTGCAACGGCGGTTCCTGATCGGCAAACGCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTaggcagg < 1:95823/143‑1 (MQ=255) gcgGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGTGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCAc > 2:447130/1‑143 (MQ=255) gcgGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCCCGCCTTCGTCCGGTGGGCAGGCGAAGTCGAAAGCAc > 2:775694/1‑143 (MQ=255) gcgGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCAAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCATCGTTCGGGAGGCAGGCGAAGTCGACAGCAc > 2:712414/1‑143 (MQ=255) tttCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAACGCACGGTcc > 1:401105/1‑143 (MQ=255) tttCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGCTcc > 2:433889/1‑143 (MQ=255) tCGTGTTGCAGCTGCGGTTCCGGATCTTCAAGCGCGAGCCGTGCGAGGTGGTGGACGCCAATGATACGGCTGAGGATAAATGCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCgg < 2:453735/143‑1 (MQ=255) gTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCgggc > 2:616697/1‑142 (MQ=255) gCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCg > 1:634119/1‑143 (MQ=255) cAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGTTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTCCGGGAGGCAGGCGAAGACGAAAGAACGGCCCGGGCTACCGa > 2:257810/1‑143 (MQ=255) aaCTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGAc > 2:541461/1‑143 (MQ=255) tGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATCGATGCCAGACGCGCAAGGACCAAGAATATGTTCTGGTGGCCGGCGAGGCCGGACGCACGGGCCGGGATACCGACgat > 2:252897/1‑141 (MQ=255) tGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGtt < 1:525036/143‑1 (MQ=255) cGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGTtca > 1:459027/1‑143 (MQ=255) tCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGTTCATCATCACttt < 2:422331/143‑1 (MQ=255) gTCcacccacgcgcactgctcgagtttgacgatcaggaaccgcagttgcaaaacgaaatccgcgagatgatgaaaggttttgatgctccgcgtgaattttacgttgggggtctgaaagaagggatcgcgacgctgggtgccgg > 2:469493‑M1/1‑3 (MQ=255) tCAAACTCAAGCAGTGCGCGTGGGTGGACCCCAATCATCCGGTTCATTATAAATTCCAGACGCGTAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGTTCATCATCACTTTCaa < 2:232171/143‑1 (MQ=255) ccacccacgcgcactgctcgagtttgaccatcattaaccgcagttgcaaaacgaaatccgcgagatgatgaaaggttttgattctccgcgtgaattttacgttggtcgtctgactgaagggatcgcgacgctgggtgccgcgt < 1:220669‑M1/143‑143 (MQ=255) | GCGCTTCGGATAAAACGCGGCACCCAGCGTCGCGATCCCTTCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGTGGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGTTCATCATCACTTTCAAC > NC_000913/1785391‑1785664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |