| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1785522 | 29 (0.670) | 3 (0.070) | 3/256 | NT | 9.2% | coding (1591/2379 nt) | ppsA | phosphoenolpyruvate synthetase |
| ? | NC_000913 | = 1785546 | 31 (0.730) | coding (1567/2379 nt) | ppsA | phosphoenolpyruvate synthetase | |||||
ACGCGGCACCCAGCGTCGCGATCCCTTCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGTTCATCATCACTTTCAACGGCAGATCCG > NC_000913/1785405‑1785674 | aCGCGGCACCCAGCGTCGCGATCCCTTCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTAATGATGGTCAAACTCGAGCAGTGCGCGTGGGT‑Gg < 1:220669‑M2/143‑2 (MQ=255) ccggCACCCAGCGTCGCGATCCCTTCTTTCAGACCCCCAACGTAAAATTCACGCGGAGCATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCGAGCAGTGCGCGTGGGT‑Ggac > 2:469493‑M2/2‑140 (MQ=255) ggCACCCAGCGTCGCGATCCCTTCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGc > 1:227949/1‑143 (MQ=255) gcgcgCTCCCGTCAGTCAGACGACCAACGTACAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACgg < 2:807670/142‑1 (MQ=255) aTCCCTTCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACCCACGCAGTGCGCGTAGGA‑GGACGCCAATCATGCGGAtgct > 2:401364/1‑141 (MQ=255) ttCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATaa < 1:533864/143‑1 (MQ=255) ttCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGAGTTCGTTTTGCAACTGCGGTTCCTGCTCGTCAAACTCAAGCAGTGCGCGTGGTC‑GGACGCCCATCACCCGGTTGAGGATaa > 2:524237/1‑143 (MQ=255) acgacCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGAc < 1:809955/143‑1 (MQ=255) cAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCAGCTCGCGGCTTTCGTGCTGCAACTGCGGCTCCTCATCGTCAACCTCCACCAGTGCTCGTCGGT‑GGACGCCAACCATAGGGCTGACCATAAAGTCGCGAcgcccc > 2:468761/1‑140 (MQ=255) gTAAAATCCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCACTCATACGGTTGCTGATAAATTTCAGAAGTGCAAgga > 1:124971/1‑142 (MQ=255) aaTTCACGCGTAGAATCAAAACCTTTCATCAGCTCGCGGATTTCGTTGTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCAc < 1:585222/143‑1 (MQ=255) ttCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGCTGATAAATTCCAGACGCGCAAGGCCCACGc > 1:577791/1‑143 (MQ=255) gagaATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCttcgttc < 1:379519/143‑1 (MQ=255) tCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTACCATATCGTCAAACTCAAGCAGTGCGCGTGGGT‑CAGCTCTTATCATAAAATACTTGTTTATTTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTag > 1:753445/1‑143 (MQ=255) aCCTTTCATCATCGCGCCGATTTCGTTTTGCAACGGCGGTTCCTGATCGGCAAACGCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTaggcagg < 1:95823/143‑1 (MQ=255) gcgGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGTGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCAc > 2:447130/1‑143 (MQ=255) gcgGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCCCGCCTTCGTCCGGTGGGCAGGCGAAGTCGAAAGCAc > 2:775694/1‑143 (MQ=255) gcgGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCAAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCATCGTTCGGGAGGCAGGCGAAGTCGACAGCAc > 2:712414/1‑143 (MQ=255) tttCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAACGCACGGTcc > 1:401105/1‑143 (MQ=255) tttCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGCTcc > 2:433889/1‑143 (MQ=255) tCGTGTTGCAGCTGCGGTTCCGGATCTTCAAGCGCGAGCCGTGCGAGGTGGT‑GGACGCCAATGATACGGCTGAGGATAAATGCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCgg < 2:453735/143‑1 (MQ=255) gTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCgggc > 2:616697/1‑142 (MQ=255) gCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCg > 1:634119/1‑143 (MQ=255) cAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGTTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTCCGGGAGGCAGGCGAAGACGAAAGAACGGCCCGGGCTACCGa > 2:257810/1‑143 (MQ=255) aaCTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGAc > 2:541461/1‑143 (MQ=255) tGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATCGATGCCAGACGCGCAAGGACCAAGAATATGTTCTGGTGGCCGGCGAGGCCGGACGCACGGGCCGGGATACCGACgat > 2:252897/1‑141 (MQ=255) tGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGtt < 1:525036/143‑1 (MQ=255) cGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGTtca > 1:459027/1‑143 (MQ=255) tCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGTTCATCATCACttt < 2:422331/143‑1 (MQ=255) tCAAACTCAAGCAGTGCGCGTGGGT‑GGACCCCAATCATCCGGTTCATTATAAATTCCAGACGCGTAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGTTCATCATCACTTTCaa < 2:232171/143‑1 (MQ=255) aCTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGTTCATCATCACTTTCAAAGGc > 1:829691/1‑143 (MQ=255) cTCAAGCAGTGCGCGTGGGT‑Ggacgatcaggaaccgcagttgcaaaacgaaatccgcgagatgatgaaaggttttgattctccgcgtgaatttt > 1:15432‑M2/1‑21 (MQ=255) cTCAAGCAGTGCGCGTGGGT‑Ggacgatcaggaaccgcagttgcaaaacgaaatccgcgagatgatgaaaggttttgattctccgcgtgaatttt < 2:15432‑M2/94‑74 (MQ=255) cAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGTTCATAATCCCTATCAACGGCAGa > 1:308111/1‑143 (MQ=255) aGCAGTGCGCGTGGGT‑GGACGCCAATCATTCTTCGCAGTTTAAGGTGGTGAGGCGCAAGGCCCACGCCTTCTTTCGGCATGCAGTCTAATTTGGAATGACGGTCCGGGGTACCGACGTGCGTCCTGACTTGGACCGGCAGaca > 2:142990/1‑141 (MQ=255) aGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGCCGCGCACGCCCCACGCCCTCGTTCGGCAGGCAGGCGAAGTCGCAAGCACGGCCAGGGTTACCGACGCTCATCATCACTTTCCACGGccgctc > 2:138821/1‑138 (MQ=255) ggagtgggtgggttggagggtcaggagccgcagttgcaaagggaagtccgcgagatgatgaaaggtttggattctccgcgtgaattttacgttggtcgtctgactgaagggatcgcgacgctgggtgccgcgttttatccgaa > 2:215927‑M2/8‑15 (MQ=255) | ACGCGGCACCCAGCGTCGCGATCCCTTCAGTCAGACGACCAACGTAAAATTCACGCGGAGAATCAAAACCTTTCATCATCTCGCGGATTTCGTTTTGCAACTGCGGTTCCTGATCGTCAAACTCAAGCAGTGCGCGTGGGT‑GGACGCCAATCATACGGTTGATGATAAATTCCAGACGCGCAAGGCCCACGCCTTCGTTCGGTAGGCAGGCGAAGTCGAAAGCACGGTCCGGGTTACCGACGTTCATCATCACTTTCAACGGCAGATCCG > NC_000913/1785405‑1785674 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |