New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 275149	NA (NA)	5 (0.110)	5/264	NT	13.2%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	674024 =	33 (0.760)					coding (760/2583 nt)	leuS	leucine‑‑tRNA ligase

AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCTTTG  >  NC_000913/275008‑275291                                                                                                                                              |                                                                                                                                               aaGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACGGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATCTCAGGGACTTGTTCTCCCCTTCCg                                                                                                                                               >  1:249118/1‑143 (MQ=2)          tctTTTCTGGTCTGACGGCGCGTACTGCTGAATTCACTGTCGGCGAAGGTAAGATGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa                                                                                                                                      <  1:74892/143‑1 (MQ=255)            ttttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGCGGCGTTATg                                                                                                                                    >  1:723353/1‑143 (MQ=37)             tttCTGGTCTGACGGCGCTTGCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGa                                                                                                                                   <  2:292093/143‑1 (MQ=255)             tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGa                                                                                                                                   <  2:835793/143‑1 (MQ=40)             tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGa                                                                                                                                   >  1:691710/1‑143 (MQ=40)                cTGGGCGGATGGCGCTTGCTGCTGAATGCACTGGCGGCGAAGGTAAGTTGATGACTCATGATGAGCCCTGTGCTATGGCTCCAGATGACACACATGGTCTCATATCAGGGACTTGTTCGCACCTCCCGGAGGCGTTATGAGCt                                                                                                                                <  2:409719/143‑1 (MQ=14)                   gTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGGGCTggc                                                                                                                             >  1:270305/1‑143 (MQ=255)                    tCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATCACAAACATGATCCCATATCAGGGACTTCTAAGCACCTTCCGGAGGCGGTCTGCACTggcg                                                                                                                            >  2:632610/1‑143 (MQ=11)                     cgcaCGGCGCTGACTGCTGAATGTACTGTCGGCGAAGGTAAGTTGCTGACTCATGATGACCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCTAATCGGCGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcgg                                                                                                                           <  2:59438/140‑1 (MQ=14)                      tGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTGGTTCGCACCTCACGCAGGCGTTATGCGCTggcggc                                                                                                                          >  2:843181/1‑143 (MQ=14)                                   tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGCGGCGCTATGAGCCCGCGGCCCCGTTTGTATCt                                                                                                             >  2:1420/1‑143 (MQ=14)                                    gctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTg                                                                                                            <  2:749733/143‑1 (MQ=255)                                          ttCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAGGCGCTGGCGGCCCTTTTTGTACCTGattatt                                                                                                      >  2:592754/1‑143 (MQ=255)                                               tGTCGGCGAAGGTAAGCTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATcc                                                                                                 <  2:619169/143‑1 (MQ=255)                                                ttCGGCGAAGGTAATTTGATGACTCATGCTCTACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGTACTTGTGCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc                                                                                                <  2:67584/142‑1 (MQ=21)                                                    gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATTCCCAcc                                                                                            >  1:540958/1‑143 (MQ=255)                                                           tcaGTTGATGCCTCATGATGAACCCTGTTCTATGGCTCCATATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTAtt                                                                                     <  2:662902/141‑1 (MQ=255)                                                               ttGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTCTTGATCCCCACCCGCCACTaaca                                                                                 >  1:745841/1‑141 (MQ=255)                                                               ttGATAACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACTCGCTATTAAgc                                                                                 >  1:128458/1‑143 (MQ=255)                                                                   tgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGccc                                                                             >  1:464356/1‑143 (MQ=255)                                                                    gaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCg                                                                            <  2:691710/143‑1 (MQ=255)                                                                    gaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATATCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTGTCTGATTAATAATCCCGCACCGCTAGTAAGCGCCCg                                                                            >  2:73889/1‑143 (MQ=21)                                                                       tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTTTATCACAGTTTTAATTCCCACCCGCTATTAATCGCCCGgcg                                                                         >  2:173775/1‑143 (MQ=21)                                                                       tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCgcggcg                                                                         >  1:125729/1‑143 (MQ=255)                                                                       tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACGTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTACTGTTTAGTTTTATTGATCTCCACCGGCTATTAAGCGCCCGgcg                                                                         >  2:173816/1‑143 (MQ=18)                                                                         atgatgATCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGcgcg                                                                       <  1:783785/143‑1 (MQ=255)                                                                         atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGcgcg                                                                       >  1:397140/1‑143 (MQ=255)                                                                          tgatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCgg                                                                      <  1:537340/143‑1 (MQ=255)                                                                                 cccTGTTCTATGGCTCCAGATGACAACCATGATCTCATTTCGTGCAATTGTTCGCACCTTCCGGAGGCGTTCCTAGCTGTCGCCTCTCTTTGTCTCTGTTCATTAATCCCCACCCGCTCTCACGCGCCCGCGGCGGGCATcca                                                               >  2:802511/1‑141 (MQ=16)                                                                                  ccTCTTCTATGGCTCCAGATGATAAACATGTTCTCATGTCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGAGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGc                                                              <  2:12961/143‑1 (MQ=38)                                                                                   cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTCTTAATCCCCACCCGCTATTCAGCTCCCGGCGCGGGCATCTGCg                                                             >  1:553605/1‑143 (MQ=255)                                                                                     gTTCTATGGCTCCAGAGGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTGTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTc                                                           <  1:522641/143‑1 (MQ=255)                                                                                        cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCTCCTCCCGGAGGCGTTATGCGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTgg                                                        <  1:73013/143‑1 (MQ=255)                                                                                             gCTCCAGATGACAACCATGCTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAg                                                   <  1:695843/143‑1 (MQ=255)                                                                                               tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAggg                                                 >  2:740694/1‑143 (MQ=255)                                                                                                ccAGAGGCCAAGCATGAGCTCATATCGGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGt                                                <  2:585327/143‑1 (MQ=255)                                                                                                          aaCATGATCTCATATCCGGGACTTGTTCGCACTATCCGTAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCa                                      <  1:655143/143‑1 (MQ=255)                                                                                                          aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCa                                      <  1:661270/143‑1 (MQ=255)                                                                                                             aTGATCTCATATCAGGGACTTGTTCGCACCTCCCGGAGGCGTTATGAGCCGGCGGCCCTTTTTTTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTc                                   <  2:251516/143‑1 (MQ=255)                                                                                                                 agcataatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGtt                               >  2:609162/7‑143 (MQ=255)                                                                                                                               cTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGtat                 >  1:68318/1‑143 (MQ=255)                                                                                                                                ttGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTCTTAATCCCCACCCGCTCTTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTGTGCATTCTGTTAACACACACGGtatc                >  1:181714/1‑142 (MQ=255)                                                                                                                                     cGCACCTTCCGGAGGCGTTATTAGCTGTCGGTCCTTTTTGTATCTGATTATTAATCCCCACCCTCTATTAAGCTTCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACaaa           <  2:86499/143‑1 (MQ=255)                                                                                                                                       cACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTGTGTAGCTGATTATGAATCCCCACCCGCTAGTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAAcc         <  1:458082/143‑1 (MQ=255)                                                                                                                                              cGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCTTTg  <  1:121072/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                               AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCTTTG  >  NC_000913/275008‑275291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.