New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 275149	NA (NA)	5 (0.110)	5/264	NT	13.2%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	674024 =	33 (0.760)					coding (760/2583 nt)	leuS	leucine‑‑tRNA ligase

TTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGAACGACCGATCCAGTTACGCTGCATGGTTTTAACGGTGTCTGGCCAGTGATCCAGTTTAT  >  NC_000913/673883‑674164                                                                                                                                              |                                                                                                                                             ttttCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCACTAAAGGCCGCCAGTTCCTGATTCTTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGCTCGGTACAACCCATa                                                                                                                                             >  2:433074/1‑143 (MQ=255)    tctcCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAg                                                                                                                                          <  2:191755/143‑1 (MQ=255)    tccccctcgtcgCCATCTAAGCATCGGCAGCTCTCCTGTTACGGCATTCCTCAATACACGCCGCCAGTTCAGTATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAg                                                                                                                                          <  1:567722/137‑1 (MQ=255)               gCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTCCAACCCATAAAGGTGTCcgggcg                                                                                                                               >  1:846009/1‑143 (MQ=255)                 cATTGCAGCTTCGGCAACTTTGGGGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTGCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCcgggcggg                                                                                                                             <  1:719189/143‑1 (MQ=255)                    ttCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAGCCCGTAAAGGTGTCCGGGCGGGTAg                                                                                                                          >  2:726236/1‑143 (MQ=255)                     tccgCTTCGGCCACTTTGGTGTTACCGCATTCGTCACTCAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCATGTAGGTACAACCCATAAAGTTGTCTGGGCGGGTAgt                                                                                                                         <  2:260135/140‑1 (MQ=255)                     tCAGCTTCGGCAACTTGGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAgt                                                                                                                         <  1:100554/143‑1 (MQ=255)                      gacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTAAAGGTGTCCGGGCGGGTAgtg                                                                                                                        >  1:555810‑M2/121‑143 (MQ=255)                         cTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAgtgtga                                                                                                                     >  1:246745/1‑141 (MQ=255)                          gcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTAAAGGTGTCCGGGCGGGTAGTGTgaa                                                                                                                    >  1:731759‑M2/117‑143 (MQ=255)                                gaCTTTGGTGTTACGGGATTCGTCAACAAAGGCCGCCAGGTCAGGATGATTGTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCa                                                                                                              <  2:763085/142‑1 (MQ=255)                                cgcTTTGGTGTTACCGCCTTCGTTACGAGAGACCGCTAGTGCAGTATTATTTGCCGCCGCTTTCTGCGCCAGCGGCTGACCCGCAGCTACCGCCAGGTAGGTACAACCCACAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCa                                                                                                              <  2:229256/141‑1 (MQ=255)                                    ctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacgtgttcgcaccttccTAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCgt                                                                                                          <  1:373510‑M2/37‑1 (MQ=255)                                       gtgtTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGtgtt                                                                                                       <  1:736543/143‑1 (MQ=255)                                          ttACGGCATTCGTCAATAAAGGCCGCCAGTTTAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCGACCGCCAAGTACGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTc                                                                                                    <  1:844463/143‑1 (MQ=255)                                                 aTTCGTCACTAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTTCTGCGACAACGCATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCg                                                                                             <  2:505319/143‑1 (MQ=255)                                                   tCGTCAATAAAGGCCGCCAGTTCAGGATTCTTTTCCGCCGCTTTCTGAGCGAGTAGTAAATCGTCAGATATAGCCAAGGAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTGCACGGGCAGCGTGTTGTCATAGTCGtt                                                                                           >  1:842612/1‑143 (MQ=255)                                                   tCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGATCAGCGTGTTGTCATAGTCGtt                                                                                           >  1:224618/1‑143 (MQ=255)                                                      tCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTACGGGCGGGTAGTGTAAACGGTAAGCGTGTTGTCATATACGTTaaa                                                                                        >  2:405749/1‑142 (MQ=255)                                                       caacaaGGGCCGCCAGTCCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATCACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAACCGGTCAGCGTGTTGTCATAGTCGTTAACg                                                                                       <  1:251589/143‑1 (MQ=255)                                                            gaGGCCGTCGGTGCAGGATTATGTTCCGCGGGTTGCGGCGCCAGCGGATGACCCGCAGTTACCGCCAGGCAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGaa                                                                                  <  2:322993/142‑1 (MQ=255)                                                              ggCCGCCGGTTCGGGATGGTTTTCCTCCGCGTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGGGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAgg                                                                                <  2:328907/143‑1 (MQ=255)                                                                 cgccAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGCAGCTACAACCCATAAAGGTGTCCGGGCGGCTAGTGTAAACGGTCAGCGTGCTGTCATAGTCGTTACCGTTGAACGTGa                                                                             >  1:178959/1‑143 (MQ=255)                                                                    cAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGGGGTGTGGTAGTCGTTGACGGTGAAGGTGAtct                                                                          >  2:380328/1‑143 (MQ=255)                                                                     aGTTCAGGCTTATTTTCCGCCGCTTTCTGCGCCAGCGAATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGAtctc                                                                         <  1:210501/143‑1 (MQ=255)                                                                        tCAGGATGGTTTGCCGCCGTTTTCTGCGCCGGCGGAGGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCAc                                                                      <  2:474399/143‑1 (MQ=255)                                                                         cAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCCGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGAGGTGTAAACGGTCAGCGTGTCGTCATAGGCGTTAACGTTGAAGGTGATCTCGAca                                                                     >  2:730681/1‑142 (MQ=255)                                                                                atgttCCGCCGCTTTCTGCGCCAGCGGAAGAGCCGCGGCGGCCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCgg                                                              <  1:571007/140‑1 (MQ=255)                                                                                      tctatggctccagatgaccaacaggatctcctgtcagggacttggtcgcgccttccTAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGAACGAc                                                        <  2:698804‑M2/87‑1 (MQ=255)                                                                                      cgccgcTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCCAGTGGTCGTAGTCGTTAACGTTGAAGGTGATCTCCCCGCCTTCGCAACGAc                                                        >  1:430453/1‑143 (MQ=255)                                                                                          tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGAACGACCGAt                                                    <  1:826549‑M2/91‑1 (MQ=255)                                                                                           cTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGAACGACCGATc                                                   <  1:314517/143‑1 (MQ=255)                                                                                            tttCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCACAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGAACGACCGATcc                                                  <  1:49941/143‑1 (MQ=255)                                                                                             ttCTGCGCCAGCGGATGACGCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGAACGACCGATCCa                                                 <  1:266974/143‑1 (MQ=255)                                                                                                  cgcCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGAACGGCCGATCCAGTTAc                                            <  1:172240/143‑1 (MQ=255)                                                                                                             gACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGAACGACCGATCCAGTTACGCTGCATGGtt                                 >  1:607763/1‑143 (MQ=255)                                                                                                                       tACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGAACGACCGATCCAGTTACGCTGCATGGCTTTAACGgtgt                       >  2:802796/1‑143 (MQ=255)                                                                                                                                     taCAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGACCGACCGATCCAGTTACGCTGCATGGGTGTAACGGTGTCTGGCCAGCGATcc         >  2:283958/1‑143 (MQ=255)                                                                                                                                       cAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATTTCCACGCCTTCGGAACGACCGATCCAGTTACGCTGCACGGTTTTAACGGCGTCCGGCCGGTGACCCAg       >  2:554290/1‑143 (MQ=255)                                                                                                                                        aaCCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGAACGACCGATCCAGTTACGCTGCCACGTTTTAATGGTGGCTGGCCAGTGATCCAGt      >  2:710253/1‑143 (MQ=255)                                                                                                                                            cATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGAACGACCGATCCAGTTACTGTGCATGTTTTTAACGGTGTCTGGCCAGTGATCCAGTTTAt  >  1:474704/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                             TTTTCTCCATCGTCGCCATTTCAGCTTCGGCAACTTTGGTGTTACGGCATTCGTCAATAAAGGCCGCCAGTTCAGGATTATTTTCCGCCGCTTTCTGCGCCAGCGGATGACCCGCAGCTACCGCCAGGTAGGTACAACCCATAAAGGTGTCCGGGCGGGTAGTGTAAACGGTCAGCGTGTTGTCATAGTCGTTAACGTTGAAGGTGATCTCCACGCCTTCGGAACGACCGATCCAGTTACGCTGCATGGTTTTAACGGTGTCTGGCCAGTGATCCAGTTTAT  >  NC_000913/673883‑674164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.