New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	984434 =	NA (NA)	3 (0.070)	3/250	NT	NA	noncoding (26/29 nt)	other	REPv86b
	?	NC_000913	984459 =	NA (NA)					noncoding (1/29 nt)	other	REPv86b

GGTAAGGCACATAAAAAAGCCCGCTTTTAATGCTGGCCTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCG  >  NC_000913/984293‑984576                                                                                                                                              |                                                                                                                                               ggTAAGGCACATAAAAAAGCCCGCTTTTAATGCTGGCCTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCACATTCAAAATATTGCAGGGGACGCGTAgga                                                                                                                                               >  2:391942/1‑142 (MQ=255)  gTAAGGCACATAAAAAAGCCCGCTTTTAATGCTGGCCTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCCGGGGACGCGTAGGcc                                                                                                                                              >  1:168691/1‑143 (MQ=255)  gTAAGGCACATAAAAAAGCAAGCATTTACTGCTGGCCTGGATTTCTGGCACAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAACTCAACATATTGCACGCGCCGCGTAGGcc                                                                                                                                              >  2:740186/1‑143 (MQ=21)  cgtctggtcgcgtaaatgtggccgggatgacaccagataacatggctccgctgtgcgaagcgattgtggcagtgctgtaagcattaaaaacaatgaagcccgctgaaaagcgggctgagactgatgacaaacgcaacattGcc                                                                                                                                              >  1:202905‑M1/141‑143 (MQ=255)   ttctggtcgcgtaaatgtggccgggatgacaccagataacatggctccgctgtgcgaagcgattgtggcagtgctgtaagcattaaaaacaatgaagcccgctgaaaagcgggctgagactgatgacaaacgcaacattGCCt                                                                                                                                             <  1:391942‑M1/4‑1 (MQ=255)   tAAGGCACATAAAAAAGCCCGCTTTTAATGCTGGCCTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATGCGGCCTACAAAATCGTGCCAATACAGAATCTGGCAGGGGACGCGTAGGCCt                                                                                                                                             >  1:752397/1‑143 (MQ=38)      tggtcgcgtaaatgtggccgggatgacaccagataacatggctccgctgtgcgaagcgattgtggcagtgctgtaagcattaaaaacaatgaagcccgctgaaaagcgggctgagactgatgacaaacgcaacattGCCTGAt                                                                                                                                          >  1:327222‑M1/137‑143 (MQ=255)      gggtcgcgtaaatgtagccgggatgacaccagataacatggctccgctgtgcgaagcgattgtggcagtgctgtaagcattaaaaacaatgaagcccgctgaaaagcgggctgagactgatgacaaacgcaacattGCCTGAt                                                                                                                                          <  2:62742‑M1/7‑1 (MQ=255)         acaTAAAAAAGCCCGCTTTTAATGCTGGCCTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGGCGCGTAGGCCTGACAAg                                                                                                                                       >  2:800839/1‑143 (MQ=255)          caTAAAAAAGCCCGCTTTTAATGCTGGCCTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGc                                                                                                                                      <  2:305620/143‑1 (MQ=255)           aTAAAAAAGCCCGCTTTTAATGCTGGCCTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGGCGCGTAGGCCTGATAAGCg                                                                                                                                     >  1:606327/1‑143 (MQ=255)            tAAAAAAGCCCGCTTTTAATGCTGGCCTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCACATTAAAAATATTGCACGGGACGCGAAGGCGTGATAAGCGt                                                                                                                                    >  2:626593/1‑143 (MQ=37)                          ggatgacaccagataacatggctccgctgtgcgaagcgattgtggcagtgctgtaagcattaaaaacaatgaagcccgctgaaaagcgggctgagactgatgacaaacgcaacattGCCTGATAAGCGTAGCGCATCAGGCaa                                                                                                                      >  2:741902‑M1/117‑143 (MQ=255)                                    gCCTGGTCTGCTGGCAAATTGCGGGTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGttt                                                                                                            <  2:664464/143‑1 (MQ=21)                                    gCCTGGATTTCTGGCAAAGTGCGCTTGGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGttt                                                                                                            <  2:514692/143‑1 (MQ=255)                                     ccTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGCTTg                                                                                                           >  2:482683/1‑143 (MQ=255)                                       tGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGtc                                                                                                         >  1:178997/1‑143 (MQ=255)                                                        gcgcTTTGTTTAGGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGTGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCt                                                                                        <  1:366949/143‑1 (MQ=255)                                                                attgtggcagtgctgtaagcattaaaaacaatgaagcccgctgaaaagcgggctgagactgatgacaaacgcaacattGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGtt                                                                                                             <  1:297499‑M1/36‑1 (MQ=255)                                                                attgtggcagtgctgtaagcattaaaaacaatgaagcccgctgaaaagcgggctgagactgatgacaaacgcaacattGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGtt                                                                                                             >  2:297499‑M1/79‑114 (MQ=255)                                                                   aTGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCCATTCAACGGGc                                                                             >  2:310227/1‑143 (MQ=255)                                                                       cGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATACTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCa                                                                         >  1:439815/1‑143 (MQ=255)                                                                       cGGATGCGGCACGAGCGCCTTATCAGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGAGTAGGCCTGATAAGCGTAGCGCATAAGGCAATGTTGCGTTTGTCATAAGTCTCAGCCCGCTTGTCAGCGCGCATCa                                                                         >  2:483045/1‑143 (MQ=21)                                                                            gtggCACGAGCGCCTTGTCCGGTCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGTCCGCTTTTCAGCGGGCTTCATTGtt                                                                    <  1:514945/141‑1 (MQ=255)                                                                                   gAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGACCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCCGCCCGCTCCTCCGCGGGCTTCATCGTTTCTaacg                                                             >  2:10328/1‑141 (MQ=21)                                                                                        ccTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTGATTGTATTTAATGCTTAc                                                        >  2:243048/1‑143 (MQ=255)                                                                                        ccTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTAc                                                        >  1:791389/1‑143 (MQ=255)                                                                                            aggcGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCa                                                    <  2:445457/140‑1 (MQ=255)                                                                                            aTCCGGCCTACAAAATCGCGCAAATGCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCa                                                    <  2:634454/143‑1 (MQ=255)                                                                                             tCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTCACAGCAc                                                   >  2:684055/1‑143 (MQ=255)                                                                                                           tCGTGCTAATGCAAATTAGTGCAGGGGACGCGGAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCtt                                     <  2:522873/143‑1 (MQ=38)                                                                                                            cGTCCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTc                                    <  1:95697/143‑1 (MQ=255)                                                                                                             gTGCAAATGCAGCAGATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTGCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCg                                   <  2:622840/143‑1 (MQ=37)                                                                                                                  aaTTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTGTGGCATCAGTCTCAGCCCGCTTTTCACCGGGCTTCATTCTGTTTAATGCTTACAGCACTCCCACAGTCGCTTCTcacgg                              >  2:595723/1‑141 (MQ=37)                                                                                                                    ttCAAAATATTGCAGGGGACGCGTAGTCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCg                            <  2:399470/143‑1 (MQ=255)                                                                                                                      cAAAATATGGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGa                          <  1:282917/143‑1 (MQ=255)                                                                                                                           tatTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTGTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCAt                     <  1:389283/143‑1 (MQ=255)                                                                                                                                           tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATc     <  2:217316/143‑1 (MQ=255)                                                                                                                                              GCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCg  >  1:35145‑M1/1‑143 (MQ=255)                                                                                                                                              GCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGGTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCg  >  1:709232‑M1/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                               GGTAAGGCACATAAAAAAGCCCGCTTTTAATGCTGGCCTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCG  >  NC_000913/984293‑984576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.