New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	984434 =	NA (NA)	3 (0.070)	3/250	NT	NA	noncoding (26/29 nt)	other	REPv86b
	?	NC_000913	984459 =	NA (NA)					noncoding (1/29 nt)	other	REPv86b

TTTAATGCTGGCCTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCGGCCACATTTACGCGACCAGAAG  >  NC_000913/984318‑984598                                                                                                                                              |                                                                                                                                            ggatgacaccagataacatggctccgctgtgcgaagcgattgtggcagtgctgtaagcattaaaaacaatgaagcccgctgaaaagcgggctgagactgatgacaaacgcaacattGCCTGATAAGCGTAGCGCATCAGGCaa                                                                                                                                            >  2:741902‑M1/117‑143 (MQ=255)           gCCTGGTCTGCTGGCAAATTGCGGGTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGttt                                                                                                                                  <  2:664464/143‑1 (MQ=21)           gCCTGGATTTCTGGCAAAGTGCGCTTGGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGttt                                                                                                                                  <  2:514692/143‑1 (MQ=255)            ccTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGCTTg                                                                                                                                 >  2:482683/1‑143 (MQ=255)              tGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGtc                                                                                                                               >  1:178997/1‑143 (MQ=255)                               gcgcTTTGTTTAGGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGTGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCt                                                                                                              <  1:366949/143‑1 (MQ=255)                                       attgtggcagtgctgtaagcattaaaaacaatgaagcccgctgaaaagcgggctgagactgatgacaaacgcaacattGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGtt                                                                                                                                   <  1:297499‑M1/36‑1 (MQ=255)                                       attgtggcagtgctgtaagcattaaaaacaatgaagcccgctgaaaagcgggctgagactgatgacaaacgcaacattGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGtt                                                                                                                                   >  2:297499‑M1/79‑114 (MQ=255)                                          aTGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCCATTCAACGGGc                                                                                                   >  2:310227/1‑143 (MQ=255)                                              cGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATACTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCa                                                                                               >  1:439815/1‑143 (MQ=255)                                              cGGATGCGGCACGAGCGCCTTATCAGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGAGTAGGCCTGATAAGCGTAGCGCATAAGGCAATGTTGCGTTTGTCATAAGTCTCAGCCCGCTTGTCAGCGCGCATCa                                                                                               >  2:483045/1‑143 (MQ=21)                                                   gtggCACGAGCGCCTTGTCCGGTCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGTCCGCTTTTCAGCGGGCTTCATTGtt                                                                                          <  1:514945/141‑1 (MQ=255)                                                          gAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGACCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCCGCCCGCTCCTCCGCGGGCTTCATCGTTTCTaacg                                                                                   >  2:10328/1‑141 (MQ=21)                                                               ccTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTGATTGTATTTAATGCTTAc                                                                              >  2:243048/1‑143 (MQ=255)                                                               ccTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTAc                                                                              >  1:791389/1‑143 (MQ=255)                                                                   aggcGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCa                                                                          <  2:445457/140‑1 (MQ=255)                                                                   aTCCGGCCTACAAAATCGCGCAAATGCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCa                                                                          <  2:634454/143‑1 (MQ=255)                                                                    tCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTCACAGCAc                                                                         >  2:684055/1‑143 (MQ=255)                                                                                  tCGTGCTAATGCAAATTAGTGCAGGGGACGCGGAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCtt                                                           <  2:522873/143‑1 (MQ=38)                                                                                   cGTCCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTc                                                          <  1:95697/143‑1 (MQ=255)                                                                                    gTGCAAATGCAGCAGATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTGCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCg                                                         <  2:622840/143‑1 (MQ=37)                                                                                         aaTTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTGTGGCATCAGTCTCAGCCCGCTTTTCACCGGGCTTCATTCTGTTTAATGCTTACAGCACTCCCACAGTCGCTTCTcacgg                                                    >  2:595723/1‑141 (MQ=37)                                                                                           ttCAAAATATTGCAGGGGACGCGTAGTCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCg                                                  <  2:399470/143‑1 (MQ=255)                                                                                             cAAAATATGGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGa                                                <  1:282917/143‑1 (MQ=255)                                                                                                  tatTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTGTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCAt                                           <  1:389283/143‑1 (MQ=255)                                                                                                          aacgcaacattgcctgatgcgctacgcttatcaggcAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAAt                                                                >  2:297499‑M2/37‑114 (MQ=255)                                                                                                          aacgcaacattgcctgatgcgctacgcttatcaggcAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAAt                                                                <  1:297499‑M2/78‑1 (MQ=255)                                                                                                                  tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATc                           <  2:217316/143‑1 (MQ=255)                                                                                                                   ttgcctgatgcgctacgcttatcaggcAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATcc                          >  2:741902‑M2/28‑143 (MQ=255)                                                                                                                     GCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCg                        >  1:35145‑M1/1‑143 (MQ=255)                                                                                                                     GCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGGTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCg                        >  1:709232‑M1/1‑143 (MQ=255)                                                                                                                      CCTGATAAGCGTGGCGCATCCGGCAATGTTGCGTTTGTCAGCAGTCTCGGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCgg                       >  2:318871‑M1/1‑143 (MQ=255)                                                                                                                       CTGATAAGCGTAGCGCATCAGGCAATGTAGCGCTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCATACATCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTCTCTGGTGTACTCCCGGc                      <  2:294349‑M1/143‑1 (MQ=255)                                                                                                                                     gcATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCATCATTGCTTCTAATGCTTACAGCACTGCCACAATCGCAGCGCACAGCGGAGCCGTATTATCAGGTGTCATCCCGGCCACCTTGAcgcacc        >  2:650068/1‑140 (MQ=255)                                                                                                                                       atcaggcAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCGGCTACATTTACGCGaccc      <  2:62742‑M2/136‑2 (MQ=255)                                                                                                                                       atcaggcAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCGGCCACATTTACGCGACCa      >  1:327222‑M2/8‑143 (MQ=255)                                                                                                                                          aggcAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCGGCCACATTTACGCGACCAGaa   <  1:391942‑M2/139‑1 (MQ=255)                                                                                                                                           ggcAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCGGCCACATTTACGCGACCagacg  >  1:202905‑M2/4‑141 (MQ=255)                                                                                                                                              |                                                                                                                                            TTTAATGCTGGCCTGGATTTCTGGCAAAGTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAAATATTGCAGGGGACGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTCTCAGCCCGCTTTTCAGCGGGCTTCATTGTTTTTAATGCTTACAGCACTGCCACAATCGCTTCGCACAGCGGAGCCATGTTATCTGGTGTCATCCCGGCCACATTTACGCGACCAGAAG  >  NC_000913/984318‑984598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.