New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1310621 =	45 (1.030)	7 (0.160)	7/264	NT	15.2%	coding (245/297 nt)	yciI	protein YciI
	?	NC_000913	= 1517349	33 (0.760)					intergenic (‑155/‑40)	yncL/ortT	uncharacterized protein YncL/orphan toxin OrtT

TGGTGGTGAATGCACTGACCGGCTATAAGGAAAGGCCAAACAAGAACACGGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGTCAACAAACGA  >  NC_000913/1310482‑1310761                                                                                                                                            |                                                                                                                                             tggtggtgAATGCACTGACCGGCTATAAGGAAAGGCCAAACAAGAACACGGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATCGACTCCTGCCGCta                                                                                                                                           >  1:47324/1‑143 (MQ=255)       tgAATGCACTGACCGGCTATAAGGAAAGGCCAAACAAGAACACGGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCtacgtacg                                                                                                                                     >  1:324312/1‑143 (MQ=255)          tatgtgtatagtacgggttaagcaaatccgcaataatactcattctgaagatggataagggcaagttgctgtttgatgattttttctcaaactggtgaaaaaacttgatgtacgtcacaaattgacgcatgctacatactgct                                                                                                                                  <  2:227921‑M1/13‑5 (MQ=255)           tGCACTGACCGGCTATAAGGAAAGGCCAAACAAGAACACGGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACCTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGAGTc                                                                                                                                 >  2:540439/1‑143 (MQ=255)              aCTGACCGGCTATAAGGAAAGGCCAAACAAGAACACGGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGc                                                                                                                              >  1:294771/1‑143 (MQ=255)              aCTGACCGGCTATAAGGAAAGGCCAAAAAAGAACACCGGTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGc                                                                                                                              >  2:465268/1‑143 (MQ=255)                tGACCGGCTATAAGGAAAGGCCAAACAAGAACACGGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCAt                                                                                                                            <  2:658148/143‑1 (MQ=255)                  aCCGGCTATAAGGAATGGACAAAGAGGTCCACTGGTGCAAAAACCGTGCTCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAACCGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCg                                                                                                                          <  2:59675/143‑1 (MQ=255)                  aCCGGCTATAAGGAAAGGCCAAACAAGAAGACGTTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATCCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGCCTTCTTCCTCTACGTACGGGTCAGCATCg                                                                                                                          <  2:300903/143‑1 (MQ=255)                  aCCGGCTATAAGGAAAGGCCAAACAAGAACACGGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCg                                                                                                                          >  2:358189/1‑143 (MQ=255)                    cGGCTATAAGGAAAGGCCAAACAAGAACACGGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATCCAGAACACTTTCTTAACTGGTTTCACTGAAACGTGCTCATAGACTCCTGCCGCTACCCACGCGTCAGCaaccgc                                                                                                                        >  2:792626/1‑138 (MQ=255)                        tataAGGAAAGGCCAAACAAGAACACGGTTGCAAAAACCGTGCCCTTAAATATTGAAGCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAg                                                                                                                    <  1:612837/143‑1 (MQ=255)                               gaaaatccgcaataatactcattctgaagatggataagggcaagttgctgtttgatgattttttctcaaactggtgaaaaaacttgatgcacgtcaaaaaatgacgcatGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAg                                                                                                             <  1:584431‑M1/34‑1 (MQ=255)                               aaaGGCCAACCCAGACCACTGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAg                                                                                                             <  1:748961/143‑1 (MQ=255)                                 agtccAAACAAGAACACGGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAgct                                                                                                           <  2:508795/140‑1 (MQ=255)                                  tgCCAAAAAAGAACACGGTTGCAAAAGCCGTGCCCTTAAATATTGAGTCTCTATTGAGAACACTTTCTTAAATGGTGTCACTGAAACGTGTTCATAGACTCCTGCCGCGACGTACGGGTCAGCATCGGCCCAGGCCTGAgctg                                                                                                          <  1:837026/142‑1 (MQ=255)                                  ggCCAAACAAGAACACGGCTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAgctg                                                                                                          <  1:342284/143‑1 (MQ=255)                                   gCCAAACAAGAACACGGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAAGGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAgctgc                                                                                                         <  2:307845/143‑1 (MQ=255)                                         aataatactcattctgaagatggataagggcaagttgctgtttgatgattttttctcaaactggtgaaaaaacttgatgcacgtcaaaaaatgacgcatGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAg                                                                                                   >  1:92365‑M1/100‑143 (MQ=255)                                             aaCACGGTTGCAAAAACCGTGCCTTTATATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGag                                                                                               >  2:513643/1‑142 (MQ=255)                                              tactcattctgaagatggataagggcaagttgctgtttgatgattttttctcaaacagatgaaaaaacttgatgcacgtcaaaaaataacgcatGCTACGTACTGGTCAACATACGACCAGGCCTAACCTAATTccagcactt                                                                                              <  2:730188‑M1/49‑5 (MQ=255)                                               cacGGTTGCAAAAACCGTGCCCTTAAATATTGGATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCGGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTc                                                                                             <  2:352191/143‑1 (MQ=255)                                               cacGGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTc                                                                                             <  2:186109/143‑1 (MQ=255)                                                 tcattctgaagatggataagggcaagttgctgtttgatgattttttctcaaactggtgaaaaaacttgatgcacgtcaaaaaatgacgcatGCTACGTAAGGGTCAGCATCGGACCAGGCCTGAGCTGCTTCACGCGATTCaa                                                                                           <  2:322175‑M1/52‑1 (MQ=255)                                                  ggTTGCAAAAACCGTGCCCTTAAAGATTGAATCTCTATTCAGAACACTTGCTTAAAGGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCaaa                                                                                          <  1:771329/143‑1 (MQ=255)                                                      gCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCACAGGCCTATGCTGCTTCCAGCGATTCAAATTCa                                                                                      <  1:121572/143‑1 (MQ=255)                                                      ctgaataaggataggggcaaggtgctgtttgatgagtttgtctcaaactggtgaaaaaacttgatgcacgtcaaaaaatgacgcatGCTACGTACGGGTAAGCATCTGCGCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCa                                                                                      >  2:376409‑M1/87‑143 (MQ=255)                                                      acAAAAACCGTGCCCTTAAACATTGAATCCCGATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTCCGTTTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCa                                                                                      <  2:180420/142‑1 (MQ=255)                                                       cAAAAACCGTGCCCTTAAATATTGAATCTCTCTTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCAACCGCTACGTACGGGTCAGCATCGACCCATCCCTTAGCTTCTTCCAACTATGCAAATTccg                                                                                     >  2:214450/1‑141 (MQ=255)                                                         aaaaCCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCCGGCCTGAGCTGCTTCCTGAGATGAAAATTCAGCa                                                                                   >  2:51529/1‑143 (MQ=255)                                                                      tAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGc                                                                      <  1:358189/143‑1 (MQ=255)                                                                        aaTATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGACCGAACTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCa                                                                    >  1:797667/1‑143 (MQ=255)                                                                         atatTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAg                                                                   >  1:469206/1‑143 (MQ=255)                                                                               aaTCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATc                                                             <  1:419454/143‑1 (MQ=255)                                                                                aTCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCGGTGAATcc                                                            >  1:262595/1‑143 (MQ=255)                                                                                    ctATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCa                                                        <  2:491116/143‑1 (MQ=255)                                                                                          tttttctcaaactggtgaaaaaacttgatgcacgtcaaaaaatgacgcatGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCATTAAACCCCCCCGCCCCt                                                  <  2:475141‑M1/93‑1 (MQ=255)                                                                                          aGAACACTCTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCt                                                  <  1:493724/143‑1 (MQ=255)                                                                                                    cTTAGATGGTTTCACGGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTAc                                        <  2:189265/143‑1 (MQ=255)                                                                                                     tgaaaCGGTTTCACTTAAGCGGGTGCATGGACTCCTGCCGCTCCGTGCGGGTGAGCGTCGGCGCAGGCCTGAGCTGCTGCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTTGATCGTTACt                                       <  1:799613/141‑1 (MQ=255)                                                                                                             tttCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATAGGCCCAGGCCTGAGCTGCGTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCg                               >  1:712194/1‑143 (MQ=255)                                                                                                                cacggcaaCGCGCTCATAGACGCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTg                            <  1:344134/137‑1 (MQ=255)                                                                                                                aaCTGAACCGTGTTCATAGACTCCTGCCGCTCCGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTg                            <  2:466431/142‑1 (MQ=255)                                                                                                                 ccagAAACGTGTGCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCACCCCCTGGCTCGTGACTGTCTACCGCTgg                           >  2:562398/4‑143 (MQ=255)                                                                                                                             tCAGAGACTCCTGCGGCTCCGTACGGGTCAGCGTCGGCCCAGGCCTTAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGc               <  2:324894/143‑1 (MQ=255)                                                                                                                              cATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCt              <  1:130232/143‑1 (MQ=255)                                                                                                                              cATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCt              <  2:158763/143‑1 (MQ=255)                                                                                                                              cATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCGGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCt              <  2:586869/143‑1 (MQ=255)                                                                                                                               aTAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCCAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTCCTGCCTCCCGCTGCCATTGGGCCAGCTg             >  1:333321/1‑143 (MQ=255)                                                                                                                                tAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCGCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCCGCAATCGCGATGGAGCCAGTACATCCCGCAGCCCCTGGATCCGTCCTCGCTACCGCTGGCATTGCAccgcctct            >  2:253001/1‑137 (MQ=255)                                                                                                                                 aGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTGAGGAATAACGGTTGAGCCAGTAAATCCCGGAGCCACTGGATCGTTAGTATCTACCGCGGGAGTTGGACCAGCTGTc           >  1:51716/1‑143 (MQ=255)                                                                                                                                   gcTCCTGCGCCTACGTCCGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGTcaa         <  2:201609/142‑1 (MQ=255)                                                                                                                                     tCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGTcaaca       >  2:747824/1‑143 (MQ=255)                                                                                                                                       cTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGTCAACaaa     >  1:815349/1‑143 (MQ=255)                                                                                                                                        tGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAACTTCAGCAATAACGGTTGCGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTCCCGCTGGCATTGGACCAGCTGTCCACAAAc    >  2:288438/1‑143 (MQ=255)                                                                                                                                          atGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCCGCTGTCAACAAACGa  <  1:85708‑M1/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             TGGTGGTGAATGCACTGACCGGCTATAAGGAAAGGCCAAACAAGAACACGGTTGCAAAAACCGTGCCCTTAAATATTGAATCTCTATTCAGAACACTTTCTTAAATGGTTTCACTGAAACGTGTTCATAGACTCCTGCCGCTACGTACGGGTCAGCATCGGCCCAGGCCTGAGCTGCTTCCAGCGATTCAAATTCAGCAATAACGGTTGAGCCAGTAAATCCCGCAGCCCCTGGATCGTTACTGTCTACCGCTGGCATTGGACCAGCTGTCAACAAACGA  >  NC_000913/1310482‑1310761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.