New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1310621 =	45 (1.030)	7 (0.160)	7/264	NT	15.2%	coding (245/297 nt)	yciI	protein YciI
	?	NC_000913	= 1517349	33 (0.760)					intergenic (‑155/‑40)	yncL/ortT	uncharacterized protein YncL/orphan toxin OrtT

TCATTGCCCCTATGTGTATAGTACGGGTTAAGAAAATCCGCAATAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGGCAGCAATCGCATTTCTTATCACCTGGTTTCTTTCTCACGATAAGAAACGCATCCGTTTC  >  NC_000913/1517210‑1517490                                                                                                                                            |                                                                                                                                              tCATTGCCCCTATGTGTATAGTACGGGTTAAGAAAATCCGCAATAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAGAAACTTGATGCACGTCAAAAAATGACGAatagt                                                                                                                                            >  1:14164/1‑141 (MQ=255)    ttGCTCCTATGTGTATAGTACGTGTTAAGAAAATCCGCAATAATACTCATTCTGATGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTgc                                                                                                                                         <  2:109901/143‑1 (MQ=255)    ttGCGCCTATGTGTATAGTAAGAGTAAAGAAAATCCGCAATAATACTCATTCTGAAGATGACTAAGGGCAAGTTGCTGTTTGATGATTAATTCCCAAACTGGTGATACAACTTGAAAAAAAAAAAAAAATGACGCATATTTgc                                                                                                                                         <  2:427689/143‑1 (MQ=255)          cTATGTGTATAGTACGGGTTAAGAAAATCCGCAATAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCgtgt                                                                                                                                   >  1:472901/1‑143 (MQ=255)           tATGTGTATAGTACGGGTTAAGCAAATCCGCAATAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGTACGTCACAAATTGACGCATgctacatactgct                                                                                                                                  <  2:227921‑M2/143‑14 (MQ=255)               tgtATAGTACGGGTTAAGAAAATCCGCAATAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCCAAAAATGACGCCTCTTTGCGCGCGTTTTAt                                                                                                                              >  2:566624/1‑143 (MQ=255)                      tACGGGTTAAGAAAATCCGCAATAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATctg                                                                                                                       >  2:391155/1‑143 (MQ=255)                         cggTCAAGAAAATCCGCAAGAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATctggct                                                                                                                    <  1:256214/142‑1 (MQ=255)                          ggTTAAGAAAATCCGCAATAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATctggctg                                                                                                                   <  1:296074/143‑1 (MQ=255)                               aGAAAATCCGCAATAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGc                                                                                                              >  2:712597/1‑143 (MQ=255)                                gAAAATCCGCAATAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATgctacgtacgggtcagcatcggcccaggcctgag                                                                                                             <  1:584431‑M2/143‑35 (MQ=255)                                   aaTCCGCAATAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCGAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCACATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGt                                                                                                          >  2:600103/1‑143 (MQ=255)                                         cAATAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACCTgg                                                                                                    >  1:361790/1‑142 (MQ=255)                                          aataatACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATgctacgtacgggtcagcatcggcccaggcctgagctgcttccag                                                                                                   >  1:92365‑M2/1‑99 (MQ=255)                                           ataataCTCATTCTGAAAATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGtct                                                                                                  <  1:18422/143‑1 (MQ=255)                                            taataCTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGtctc                                                                                                 <  1:397950/143‑1 (MQ=255)                                               taCTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACAGATGAAAAAACTTGATGCACGTCAAAAAATAACGCATgctacgtactggtcaacatacgaccaggcctaacctaattccagcactt                                                                                              <  2:730188‑M2/143‑50 (MQ=255)                                                  tCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAACAAACTTGCTGCACGTCAAAAAATGACGCATATTTGCGGACGTGGGATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATc                                                                                           >  2:290163/1‑143 (MQ=255)                                                  tCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATgctacgtaagggtcagcatcggaccaggcctgagctgcttcacgcgattcaa                                                                                           <  2:322175‑M2/143‑53 (MQ=255)                                                   cATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTCCATGTCTCTCTATCa                                                                                          >  2:264734/1‑143 (MQ=255)                                                       cTGAATAAGGATAGGGGCAAGGTGCTGTTTGATGAGTTTGTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATgctacgtacgggtaagcatctgcgcaggcctgagctgcttccagcgattcaaattca                                                                                      >  2:376409‑M2/1‑86 (MQ=255)                                                          aaGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATg                                                                                   >  2:525418/1‑143 (MQ=255)                                                          aaGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATg                                                                                   >  2:93637/1‑143 (MQ=255)                                                                     gggCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTa                                                                        >  2:242814/1‑143 (MQ=255)                                                                       gCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATg                                                                      >  2:475367/1‑143 (MQ=255)                                                                              gCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTAt                                                               <  1:351538/143‑1 (MQ=255)                                                                              gCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCAGTACATGTGTCTCTATCAACACATGCTTGTTTTTTATGCGGTTAt                                                               <  1:663341/143‑1 (MQ=255)                                                                                  tttGATGATTTTTTCTCAAACTGGTGAAAAAACTCGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGgca                                                           <  1:351329/143‑1 (MQ=255)                                                                                     gatgatTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCCCTCTCAACACATGCTTGTTTTTTATGCGGTTATCgcagcc                                                        >  2:246849/1‑142 (MQ=255)                                                                                      atgatTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGCTTTTGgcagcac                                                       >  2:124906/1‑142 (MQ=255)                                                                                           tttttCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATgctacgtacgggtcagcatcggcccaggcctgagctgcttccagcgattcaaattcagcaataacggttgagccattaaacccccccgcccct                                                  <  2:475141‑M2/143‑94 (MQ=255)                                                                                               tcgcAAACGGGTGAAAAACCTTGATGCACCTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTCAGCGACCTTATATTTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGGCAGCAATCGCATTTc                                              <  1:118965/140‑1 (MQ=255)                                                                                                ctcAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTTCGCGCGTTTTAATCATCTGGTTTGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGGCAGCAATCGCATTTCt                                             <  1:229705/143‑1 (MQ=255)                                                                                                ctcAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGGCAGTAATCGCATTTCt                                             <  2:597045/143‑1 (MQ=255)                                                                                                   aaaCTGGCGAAATGACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGGCAGCAATCGCATTTCTTAt                                          >  2:342416/1‑143 (MQ=255)                                                                                                            aaaaaaCTTGATGCACGTCAAAAAATGACGCATATTTGCTCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGGCAGCAATCGCATTTCTTATCACCTGGtt                                 <  1:676642/143‑1 (MQ=255)                                                                                                                  cTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGGCAGCAATCGCATTTCTTATCACCTGGtttctttc                           <  1:428999/143‑1 (MQ=255)                                                                                                                  cTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGGCAGCAATCGCATTTCTTATCACCTGGtttctttc                           <  1:242050/143‑1 (MQ=255)                                                                                                                     gATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGGCAGCAATCGCATTTCTTATCACCTGGTTTCTTTCTCa                        <  1:330781/143‑1 (MQ=255)                                                                                                                        gCACGTCAAGACAGGACGCATATCTGCGCGCGTTGTATTCATCTGGCTGGACGCCGGTACATGTCTCTCTATCAACACATGCTTGTTGTTTATGCGGTTATGGCAGCAATCGCATTTCTTATCACCTGGTTTCTTTCTCACgc                     <  2:683177/143‑2 (MQ=255)                                                                                                                        gCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGGCAGCAATCGCATTTCTTATCACCTGGTTTCTTTCTCACGa                     <  1:128216/143‑1 (MQ=255)                                                                                                                                         gCATATTTGCGCGCGTTTTATTCAGCAGGGTGGACGCCCGTACATGTCTCTCTATCAACACATACTAGTTTTTTATGCGATTATGGCAGCAATAGCATTGCTTATCACCTGGTTTGCCTGAAACGCTAAGAAACGCGTcccgt    >  2:513043/1‑140 (MQ=255)                                                                                                                                          cATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGGCAGCAATCGCATTTCTTATCACCTGGTTTCTTTCTCACGATAAGAAACGCATCCGttt   <  1:334608/143‑1 (MQ=255)                                                                                                                                           aTgctacgtacgggtcagcatcggcccaggcctgagctgcttccagcgattcaaattcagcaataacggttgagccagtaaatcccgcagcccctggatcgttactgtctaccgctggcattggacccgctgtcaacaaacga  <  1:85708‑M2/143‑142 (MQ=255)                                                                                                                                            |                                                                                                                                              TCATTGCCCCTATGTGTATAGTACGGGTTAAGAAAATCCGCAATAATACTCATTCTGAAGATGGATAAGGGCAAGTTGCTGTTTGATGATTTTTTCTCAAACTGGTGAAAAAACTTGATGCACGTCAAAAAATGACGCATATTTGCGCGCGTTTTATTCATCTGGCTGGACGCCCGTACATGTCTCTCTATCAACACATGCTTGTTTTTTATGCGGTTATGGCAGCAATCGCATTTCTTATCACCTGGTTTCTTTCTCACGATAAGAAACGCATCCGTTTC  >  NC_000913/1517210‑1517490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.