New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 899775	NA (NA)	4 (0.100)	4/250	NT	NA	noncoding (20/29 nt)	other	REPv82b
	?	NC_000913	= 899786	NA (NA)					noncoding (9/29 nt)	other	REPv82b

AAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGCTTTAATTGCTGCCAGCGCGTTATTCAGTTTTTCCA  >  NC_000913/899645‑899926                                                                                                                                              |                                                                                                                                             aaaaaGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCa                                                                                                                                             <  1:104938‑M2/143‑2 (MQ=255)  tgaagcCGCACATGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCat                                                                                                                                            <  2:785478‑M2/141‑3 (MQ=255)  aaaaGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCat                                                                                                                                            <  1:364384‑M2/143‑3 (MQ=255)          cATGGGCGGCTTCAGATTGCTGACAAAGGGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt                                                                                                                                    <  2:425361/143‑1 (MQ=255)               gCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTAc                                                                                                                               <  1:379287/143‑1 (MQ=255)                cGGATTAAGATAGCTGACAAAGTGCGCGGTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTAcc                                                                                                                              <  1:232863/143‑1 (MQ=255)                   cTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCttt                                                                                                                           <  1:541527/143‑1 (MQ=255)                    tgcAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTg                                                                                                                          <  2:125619/141‑1 (MQ=255)                         aTTGCTGACAAAGGGCGCGTTGGTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGtcatc                                                                                                                     <  1:237011/143‑1 (MQ=255)                             cTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGtc                                                                                                                 >  1:487328/1‑143 (MQ=255)                              tGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATGAGCGTAGCGCATCAGGCAACTTTACCCTTGTCCTCAGtct                                                                                                                >  2:16479/1‑143 (MQ=255)                              tGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGtct                                                                                                                >  1:567910/1‑143 (MQ=255)                              tGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATACGGCCTACAAAAGCGTGCAAATTCAATAGATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGtct                                                                                                                >  2:428566/1‑143 (MQ=255)                                aCAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTGGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCa                                                                                                              >  1:164039/1‑143 (MQ=255)                                  aaaGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACAAGCGTGCAAATTCACTCCATTGCATGGGCCATGTAGGCCTGATCAGCGTGGCGCATCAGGCAACTTTGCCTTTGTCCTCAGCCTCGAg                                                                                                            >  2:482363/1‑143 (MQ=17)                                  aaaGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATAGATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAAGATTACCTTTGTCATCGGTCGCacg                                                                                                            >  1:100563/1‑141 (MQ=18)                                      tGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCcgc                                                                                                        <  1:293502/143‑1 (MQ=255)                                                    gCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTGAAGCCGCGGTTGCGGCTTTCt                                                                                          >  2:810477/1‑143 (MQ=255)                                                    gCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCt                                                                                          >  2:488224/1‑143 (MQ=255)                                                          tgtgtcgTAAGCGCATGATCCGGCCTTCAAAATCGTGCAAATTCAATACCTTGCCTGGTTCATGTAGGCCTGATAAGCGTAGTGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCt                                                                                    <  2:265465/138‑1 (MQ=21)                                                          tGCGGCGTAAACGCCGTATCCGGCCTACAAAAGCGTGCACATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCt                                                                                    <  2:816151/143‑1 (MQ=255)                                                            cggcgTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTa                                                                                  <  1:775288/143‑1 (MQ=255)                                                             ggcgTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTAc                                                                                 >  1:636954/1‑143 (MQ=255)                                                              gcgTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACt                                                                                >  1:477472/1‑143 (MQ=255)                                                              gcgTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACt                                                                                >  1:525083/1‑143 (MQ=255)                                                                gTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGCATCTTACtgc                                                                              >  2:687218/1‑142 (MQ=255)                                                                gTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACtgt                                                                              <  1:207270/143‑1 (MQ=255)                                                                 cacgcggcTTGTCCGGCCTACAAATGCGTGCAAATTCAAGACATTGCAGGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACtgtg                                                                             <  1:83913/136‑1 (MQ=21)                                                                   aaCGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTggg                                                                           >  1:224796/1‑143 (MQ=255)                                                                           aTCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTg                                                                   >  1:734722/1‑143 (MQ=255)                                                                               ggCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCa                                                               >  2:226560/1‑143 (MQ=255)                                                                               ggCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCAATGCTCa                                                               >  2:362488/1‑143 (MQ=255)                                                                               ggCCTACAAAAGCGTGCAAATTCAATACATTGAATGGGCCATGTAGGCCTGATAAGCGTAGCGCATAAGGCAATTTTACATTTGTCATCAGTCTCAAGCCGCGGTTGCGGATTACTGAATATAACTGTGGGAACCACTAGTCa                                                               >  2:237478/1‑143 (MQ=25)                                                                                gCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCAc                                                              <  2:645811/143‑1 (MQ=255)                                                                                 ccTACAAAAGCTGGCAAATTCAATACACTGCGTGGGCCATGTAGGCCTGATAAGCTTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACt                                                             <  2:629851/143‑1 (MQ=39)                                                                                 acTACAAAAGCGTGCAAATTCAATACATTGTATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACt                                                             <  1:26728/142‑1 (MQ=255)                                                                                            gTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCCCTGGTCGCTGCTTTTTTgtt                                                  >  1:219832/1‑141 (MQ=255)                                                                                                aaaTTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGCCACTGATTTTTTGATCAGt                                              >  1:684269/1‑143 (MQ=255)                                                                                                aaaTTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAAGTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCAGTGGTCACTGATTTTTTGATAAGt                                              >  1:305443/1‑143 (MQ=255)                                                                                                    tCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCg                                          >  1:499311/1‑143 (MQ=255)                                                                                                    tCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGGCACTGATTTTTTGGTAAGTAcgg                                          >  1:715490/1‑141 (MQ=255)                                                                                                       aTACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCatcaggcctacatggcccatgcaatgtattgaatttgcacgcttttgtcggccggataaggcgtttacgccgcatccggcataaacaacgcgcactttgtcag                                       <  1:75763‑M2/143‑104 (MQ=255)                                                                                                       aTACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGGTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTGTTTGATAAGTACCGTCa                                       >  2:296937/1‑143 (MQ=255)                                                                                                         gcATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGc                                     <  2:581203/142‑1 (MQ=255)                                                                                                          cATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCatcaggcctacatggcccatgcaatgtattgaatttgcacgcttttgtaggccggataaggcgttgacgccgcatccggcataaacaacgcgcactttgtcagcaa                                    <  1:714705‑M2/143‑107 (MQ=255)                                                                                                           aTTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTAATCAGTCTCCAGCCGCGGTTGCGGCTGTCTGACTCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTCCCGTCGGCtt                                   >  2:473304/1‑143 (MQ=38)                                                                                                                aTGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCACGCCGCGACTGCGGCTGTGTGCATCTTACTGTGGGAACCACTGCACACTGATTTTTTGATAAGTTCTGTCAGCTTGAAtg                              >  1:137285/1‑142 (MQ=25)                                                                                                                aTGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGCTTTAAtt                              >  1:549955/1‑143 (MQ=255)                                                                                                                   ggCCATGTAGGCCTGATAAGCGTAGCGTATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCCCTGATTTTTTGATAAGTACCGTCAGCTTTAATtgct                           <  1:805862/143‑1 (MQ=255)                                                                                                                   ggCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGCTTTAATtgct                           <  2:104938/143‑1 (MQ=255)                                                                                                                   ggCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGCTTTAATtgct                           <  2:534516/143‑1 (MQ=255)                                                                                                                    gCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTAACTTTGTCATCAGTCTCAAGCCGCGGATACGGCTTTCTGAATCTTACTGTGGGAAACACTGGTCACTGATCTTTTGAATCGTAACATCCCCTTTAATtggtg                          >  2:74014/1‑143 (MQ=25)                                                                                                                       aTGTAGGCCTGATAAGCGTAGCGCatcaggcctacatggcccatgcaatgtattgaatttgcacgcttttgtaggccggataaggcgtttacgccgcatccggcataaacaacgcgcactttgtcagcaatctgaagccgcac                       <  1:564750‑M2/143‑120 (MQ=255)                                                                                                                         gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGCTTTAATTGCTGCCAgc                     <  1:438909/143‑1 (MQ=255)                                                                                                                           aGGCCGGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGCTTTAATTGCTGCCAgcgc                   <  2:786629/143‑1 (MQ=255)                                                                                                                              ccTGATAAGCGTAGCGCatcaggcctacatggcccatgcaatgtattgaatttgcacgcttttgtaggccggataaggcgtttacgccgcatccggcataaacaacgcgcactttgtcagcaatctgaagccgcacatgcggc                <  1:247679‑M2/143‑127 (MQ=255)                                                                                                                              ccTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGCTTTAATTGCTGCCAGCGCGtt                <  2:636954/143‑1 (MQ=255)                                                                                                                              ccTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGCTTTAATTGCTGCCAGCGCGtt                <  1:428566/143‑1 (MQ=255)                                                                                                                              ccTGATAAGCGCAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGCTTTAATTGCTGCCAGCGCGtt                <  1:16479/143‑1 (MQ=255)                                                                                                                                  gtAAGGGGAGCGCATCGGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTGTCTGAATCTTACTGTGGGAGCCACTGGTTACTGATTTTTTGATAAGTACCGTCAGCTTTAATTGCTGCCAGCGCGTTATTc            <  2:396763/142‑1 (MQ=255)                                                                                                                                      gCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAGCCACTGGTCACTGATTTTTTGATAAGTACCGTCCGCTTTAATTGCTGCCAGCGCGTTATGCAGtt        >  1:194002/1‑143 (MQ=255)                                                                                                                                      gCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTAATGAGAGAACCACTGATCACTGATATTTTGATAAGTACCGACAGCTTTCAATGCTGCCAGCGCGTTATTCAggt        >  1:346878/1‑141 (MQ=255)                                                                                                                                       cGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGCTTTAATTGCTGCCAGCGCGTTATTCAGttt       <  1:288946/143‑1 (MQ=255)                                                                                                                                           gcgcATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGCTTTAATTGCTGCCAGCGCGTTATTCAGTTTTTcc   <  2:477472/143‑1 (MQ=255)                                                                                                                                            cgcATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCCGCTTTAATTGCTGCCAGCGCGTTATTCAGTTTTTccc  >  2:485382/1‑142 (MQ=255)                                                                                                                                              |                                                                                                                                             AAAAAGCCGCATGTGCGGCTTCAGATTGCTGACAAAGTGCGCGTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCATGGGCCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTACCTTTGTCATCAGTCTCAAGCCGCGGTTGCGGCTTTCTGAATCTTACTGTGGGAACCACTGGTCACTGATTTTTTGATAAGTACCGTCAGCTTTAATTGCTGCCAGCGCGTTATTCAGTTTTTCCA  >  NC_000913/899645‑899926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.