Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp 100% intergenic (‑271/‑264) insA‑5 ← / → uspC IS1 protein InsA/universal stress protein C

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)31 (1.270) 28/264 NT 100% intergenic (‑271/‑267) insA‑5/uspC IS1 protein InsA/universal stress protein C
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)22 (0.900) 19/264 NT 100% intergenic (‑274/‑264) insA‑5/uspC IS1 protein InsA/universal stress protein C
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

TCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1979621‑1979486
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCA  >  NC_000913/2101749‑2101890
                                                                                                                                                                                                                                                                                      
TCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTGGTATTAAATTAGGGAAGGT                                                                                                                                         >  2:186724/1‑143
            TATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGAATTAGACAAGTGGTTAATATATGTAAAACATTTCATTAACATCAAGTTGATTGTTGCCTGTCTTTGTATTTAATTAGGGAAGGTGCGCATAAGCGG                                                                                                                             >  2:178261/1‑143
                      AATGTAATTATAATAGAATATTGTACTGATTTTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTT                                                                                                                   <  2:42181/143‑1
                                TAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGAATTTAATTAGAAAAGATAAGAATAAGCGGGGAAATTCTTCTCGGCTGAC                                                                                                         >  1:22152/1‑143
                                 AAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTGGATTGATGCCTATCTTTGTAATTAATTATAGAAGGTGCGAATAAACGGAGAAATTCTTCTAGGCTGcta                                                                                                        >  2:471616/1‑140
                                       ATAGTGTACTGATTCTCCTCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGTCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCA                                                                                                  <  2:381578/143‑1
                                          ggggacgGATTCTCCGCGTTAAACGAGTGGTTAATATATGTATAACAGTTGATTAACATTAAGTGGATTGTTGCCGTTGTGTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTT                                                                                               <  2:25450/136‑1
                                                 GATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGAGACTAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTat                                                                                        >  2:109238/1‑141
                                                   TTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAGTTCTTC                                                                                      >  2:163333/1‑143
                                                     tTCCGCATTAAACAAGTTGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGGCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAT                                                                                    <  1:231357/142‑1
                                                         GCATTAAACATGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGTTTGTTGTTTTTCTTTTTATTTAATTAGGGAAGGTGCGAAGAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTT                                                                                <  1:148126/143‑1
                                                         GCATTAAACAAGTGGTTAATATATGTAAATCATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTT                                                                                <  1:375738/143‑1
                                                           ATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTGTTCATGTTTGA                                                                              >  2:382415/1‑143
                                                                atAAGTTGTTAATATATGTAAAACAGTCTATTAACATTAAGTTTATTGGTGTCGTTCTGTGTGTTTAATTAGGGAAGGTTCGAATAATCGGGGAAATTCTTCTCGTCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGA                                                                         <  2:49589/141‑1
                                                                             ATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGT                                                            <  1:19445/143‑1
                                                                               ATGTAAAACATTTCATTAACATTAAGTGGATTGTTGCCTTGCTTTGTATTGAAGTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAA                                                          <  1:178261/143‑1
                                                                                     AACATTTCATTAATATTAATTTTATTGTTGCCTATCATAGTATTGAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCT                                                    <  1:187630/143‑1
                                                                                            CATTAACTTTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATATGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCA                                             <  2:234545/143‑1
                                                                                             ATTATCATTAATTTGGTTGTGGCCTGTCTTTTTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAG                                            <  2:322450/143‑1
                                                                                             ATTAACATTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCcg                                            >  2:173106/1‑141
                                                                                             ATTAACATTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGATAGAGTAGATTTTTTCTACTGTAAATGCCTTGAATCAG                                            >  1:210869/1‑143
                                                                                              TTAACATTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTGGTGATGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGC                                           <  1:111251/143‑1
                                                                                              TTAACATTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTAAGTTATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGC                                           >  2:26103/1‑143
                                                                                                     tgAGTTGATTGTTGCCTTTCTTTGTATTTAATTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTA                                    <  1:492942/141‑1
                                                                                                         TTGATTGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACC                                >  2:409269/1‑143
                                                                                                             TTGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTT                            <  2:372927/143‑1
                                                                                                              TGTTGCCTTTCTTTGTATTTAATTAGGGAAGGTGCGAATAAGCGGGGCACTTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGGTTATTTAGACCGTTTt                           >  1:402982/1‑142
                                                                                                                TTGCCTTTCTTTCTATTTAATTAGGGAAGTTTCTAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGGCATTTCACTTCTTCATGTTTGAGCCGATGTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTT                         <  1:319366/143‑1
                                                                                                                        CTTTGTATTTAATTAGGGAAGGTGCGGATAAGCTGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTT                 <  2:218698/143‑1
                                                                                                                                TTAATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTT         <  1:466991/143‑1
                                                                                                                                  AATTAGGAAATGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTTTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTAT       <  2:139210/143‑1
                                                                                                                                   ATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCAGTTCATTCCTTCAGGTTTGAGCCGATTTTTTCTCCCTTAAATCCCTTGAATCAGCCTCTTTAGCCCGTTTCTTCGCCACTCACGGCGTTAcc      >  2:310775/1‑141
                                                                                                                                     cAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGTCTCAGTCATTTCATTTCTTCATGTTTGCGTCGATTTTTTCTCTCTTAAATGCCTTGAATCAGCCTATTTTTTCCGTTTCTTCGCCATTTAAGGCGTTATCCC    <  2:394071/142‑1
                                                                                                                                       GGGAAGGTGTGATTTAGCGTGGAAATTCTTCTCGGATAATTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTGTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCA  <  1:199377/143‑1
                                                                                                                                       GGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTATCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCA  >  1:13703/1‑143
                                                                                                                                                                                                                                                                                      
TCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTGTACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGTATTTAATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1979621‑1979486
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCA  >  NC_000913/2101749‑2101890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.