Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp 100% intergenic (‑271/‑264) insA‑5 ← / → uspC IS1 protein InsA/universal stress protein C

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)31 (1.270) 28/264 NT 100% intergenic (‑271/‑267) insA‑5/uspC IS1 protein InsA/universal stress protein C
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)22 (0.900) 19/264 NT 100% intergenic (‑274/‑264) insA‑5/uspC IS1 protein InsA/universal stress protein C
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

TGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1979351‑1979489
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT  <  NC_000913/2290113‑2289972
                                                                                                                                                                                                                                                                                         
tgtAACAGGAATAATCTTAATTGGATTTTTCTCACAATCAAAATAACTCACCATAAATAAGCAACTGCGATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAA                                                                                                                                            <  1:169307/140‑1
  AAACATGAATAATTGAAATGGGATGTTGCGCACAGTTAAAATAACTTACTGTAAATAATCATCTGCTATAAATAATCACTTTTATGCAATATCAGATAAGTTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGG                                                                                                                                          <  2:465515/143‑1
     CAGGAATTATTGAAATGGGATGTTTCTCACAGTCAAAATAATTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCAGGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGC                                                                                                                                       <  1:477490/143‑1
            acTCGAAATCAGACGTTGCGCAAAGTATAAATATCTCACCGTAAATAATCATCTGCGATGAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAG                                                                                                                                <  2:474217/141‑1
                 AAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCT                                                                                                                           <  1:411080/143‑1
                          GTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAAGCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTCCCGCACATCAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGA                                                                                                                  <  2:134528/143‑1
                             GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCA                                                                                                               <  1:457617/143‑1
                                   AGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATCTTTAAACAGACACTTACCGCACAACAAAATAAGAAAGGTGCGAACAAGTCCCTGCTATGAGCTCATGTTTG                                                                                                         >  1:411315/1‑143
                                            AACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCATATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA                                                                                                <  1:258058/143‑1
                                                 ACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT                                                                                           >  1:348670/1‑143
                                                     TAAATAATCATCTGCTATAAATAATAACTTTCATGCAATACCAGATAAGATAATTTTAAACAGACACTTACCGCACAACAAACTAATGAAGATGCGAACAAGTACCTGATATGAAATCATGTTTGTCAGCTGGAGCCATAGAA                                                                                       >  2:182532/1‑143
                                                          AATCCTCTTCTATAAATAATCACTTTCATGCAATACCATATATGCTTTTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGG                                                                                  <  1:369654/143‑1
                                                               TCTGCTATAAATAATCACTTTCATTCAATACCAGATAAGCTATTTTTAAACAGTCTCTTTCCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT                                                                             <  1:246938/143‑1
                                                               TCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGACCATGTTTGTCATCTGGAGCCATCGAACAGGGCTCAT                                                                             >  2:483668/1‑143
                                                               TCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGATACGAACAAGTACCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT                                                                             >  1:317960/1‑143
                                                                    TATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGA                                                                        <  2:189777/143‑1
                                                                    TATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGAAATCAAGAAAACTACAATCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGA                                                                        <  1:350141/143‑1
                                                                        AATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCA                                                                    >  2:13864/1‑143
                                                                                     ATGCAATACTAGATAAGCTATTTTTAAACAGGCACGTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTC                                                       <  2:439649/143‑1
                                                                                            ACCAGATAAGCTATTTTTAAACAGACACTTACAGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACA                                                >  2:101859/1‑143
                                                                                                  TAAGCTATTTTTAAACAGACACTTACCGCACACCAAACTAATGAAGGTGCGAACAAGTCCCTGTTTTGAGTTCATGTTTGTCAGCTGGAGCCATAGAACAGGGGTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAAT                                          <  1:34101/143‑1
                                                                                                                                 AACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCCTCTGGAGCCATCGAACAGGGCTCATCATGAGTCAACAACTTACCTTCGCCGACAGTGAATTCAGCAATAAGCGACGTCAAACCAGAAAAGA           >  1:43158/1‑143
                                                                                                                                 AACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTCGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACATTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGA           >  1:384861/1‑143
                                                                                                                                      ACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGCGTTCATCATGAGTCATCAACTTACATTCGCAGACAGAGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTT      >  1:448868/1‑143
                                                                                                                                        TAAGGAAGGTGCGAACCAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC    <  2:123471/143‑1
                                                                                                                                         AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGATCAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCACACCACAAAACAGGTTTTCT   >  2:170010/1‑143
                                                                                                                                          AGGAAGGTGCGAACAAGTCCCTGATATGAGTTCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT  <  2:17210/143‑1
                                                                                                                                                                                                                                                                                         
TGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1979351‑1979489
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT  <  NC_000913/2290113‑2289972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.