mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,917,406 | 0 | A | G | 26.3% | 134.0 / 13.0 | 78 | V287A (GTT→GCT) | atpG | ATP synthase F1 complex subunit gamma |
| * | NC_000913 | 4,296,060 | 0 | C | T | 26.0% | 142.4 / 65.1 | 128 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,917,395 | 0 | A | T | 21.5% | 158.8 / 10.2 | 81 | intergenic (‑20/+7) | atpD/atpG | ATP synthase F1 complex subunit beta/ATP synthase F1 complex subunit gamma |
| * | NC_000913 | 3,917,396 | 0 | A | T | 20.2% | 154.8 / 10.5 | 81 | intergenic (‑21/+6) | atpD/atpG | ATP synthase F1 complex subunit beta/ATP synthase F1 complex subunit gamma |
| Marginal new junction evidence (lowest skew 10 of 33 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 225998 | NA (NA) | 8 (0.140) | 7/276 | 6.0 | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 4051966 | 101 (1.750) | 6 (0.110) | 6/276 | 6.4 | 5.6% | intergenic (+110/‑79) | yihI/hemN | Der GTPase‑activating protein YihI/coproporphyrinogen III dehydrogenase |
| ? | NC_000913 | = 4052012 | 103 (1.840) | intergenic (+156/‑33) | yihI/hemN | Der GTPase‑activating protein YihI/coproporphyrinogen III dehydrogenase | |||||
| * | ? | NC_000913 | = 4114535 | 108 (1.880) | 5 (0.090) | 5/266 | 6.7 | 4.6% | intergenic (‑63/+34) | fpr/glpX | flavodoxin/ferredoxin‑NADP(+) reductase/fructose‑1,6‑bisphosphatase 2 |
| ? | NC_000913 | = 4114539 | 107 (1.990) | intergenic (‑67/+30) | fpr/glpX | flavodoxin/ferredoxin‑NADP(+) reductase/fructose‑1,6‑bisphosphatase 2 | |||||
| * | ? | NC_000913 | 4283220 = | 94 (1.630) | 5 (0.090) | 4/264 | 7.3 | 5.4% | intergenic (‑145/+33) | yjcF/actP | pentapeptide repeat‑containing protein YjcF/acetate/glycolate:cation symporter |
| ? | NC_000913 | 4283244 = | 88 (1.650) | intergenic (‑169/+9) | yjcF/actP | pentapeptide repeat‑containing protein YjcF/acetate/glycolate:cation symporter | |||||
| * | ? | NC_000913 | = 4236225 | 104 (1.810) | 4 (0.070) | 4/264 | 7.3 | 3.9% | intergenic (+77/‑37) | yjbE/yjbF | uncharacterized protein YjbE/lipoprotein YjbF |
| ? | NC_000913 | = 4236229 | 99 (1.850) | intergenic (+81/‑33) | yjbE/yjbF | uncharacterized protein YjbE/lipoprotein YjbF | |||||
| * | ? | NC_000913 | 4122323 = | 101 (1.750) | 5 (0.090) | 4/268 | 7.3 | 5.1% | intergenic (‑36/+57) | hslV/ftsN | peptidase component of the HslVU protease/cell division protein FtsN |
| ? | NC_000913 | 4122343 = | 92 (1.690) | intergenic (‑56/+37) | hslV/ftsN | peptidase component of the HslVU protease/cell division protein FtsN | |||||
| * | ? | NC_000913 | 4245188 = | NA (NA) | 4 (0.070) | 4/272 | 7.4 | NA | noncoding (31/34 nt) | other | REP315c |
| ? | NC_000913 | 4245218 = | NA (NA) | noncoding (1/34 nt) | other | REP315c | |||||
| * | ? | NC_000913 | 4459864 = | 130 (2.260) | 3 (0.060) | 3/266 | 7.9 | 2.4% | intergenic (+553/+36) | pmbA/nrdG | metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein |
| ? | NC_000913 | 4459896 = | 122 (2.260) | intergenic (+585/+4) | pmbA/nrdG | metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein | |||||
| * | ? | NC_000913 | 4102317 = | 106 (1.840) | 3 (0.060) | 3/266 | 7.9 | 3.1% | coding (628/984 nt) | kdgT | 2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
| ? | NC_000913 | 4102353 = | 91 (1.690) | coding (664/984 nt) | kdgT | 2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter | |||||
| * | ? | NC_000913 | 686689 = | 50 (0.870) | 3 (0.060) | 3/262 | 7.9 | 6.1% | intergenic (‑20/+150) | gltJ/gltI | glutamate/aspartate ABC transporter membrane subunit GltJ/glutamate/aspartate ABC transporter periplasmic binding protein |
| ? | NC_000913 | 686717 = | NA (NA) | intergenic (‑48/+122) | gltJ/gltI | glutamate/aspartate ABC transporter membrane subunit GltJ/glutamate/aspartate ABC transporter periplasmic binding protein | |||||