| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 568,268 | IS1 (–) +9 bp | 100% | intergenic (+21/‑39) | renD → / → emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 29 (1.030) | 28/264 | NT | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 568268 = | 0 (0.000) | intergenic (+21/‑47) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 568276 | 0 (0.000) | 20 (0.720) | 17/262 | NT | 100% | intergenic (+29/‑39) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | = 1050545 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
AAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGCCATCTGTTG > NC_000913/568135‑568417 | tccggcggtgcttttgccgttacgcaccaccccgtcagtagctaaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTgtag < 2:76765‑M2/10‑1 (MQ=255) aaTGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggta > 2:475674‑M1/1‑139 (MQ=255) gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaaaagaagccactggagcacctaaaaaacaccatcatacattaaataagtaaattagcaacataacaCAAACAGTAGTACAAtt > 1:406557‑M2/127‑143 (MQ=255) gagggaacgcTGAGCATGAATCTGAGCTTTAAGGCGTGTCGCCAGAGTTCCGCGATGGAACGGTTATTGAGACTATATAAAAGAACATCAATGGGAACATAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgac < 2:25386‑M1/140‑10 (MQ=255) ggaaAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATAGACGGTATATAAAAGAACCTCAATGAGCACACCATGATGACCCACGTGAGTTCAGTTCAAGCTGTAcgtaagtactcc > 2:31847‑M1/1‑131 (MQ=255) cccttacgcaccaccccgacagtagccgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGt < 1:372488‑M2/26‑1 (MQ=255) ttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactgaagcacctcaaaaacaccatcatacactaaatcagtaagtaggcagcaaaaccCAAACTGTAGTACAATTCTCTCCAGTTTg > 1:536936‑M2/115‑143 (MQ=255) tggtatctgATTTTTAAGGAGTGTCGCCAGAGTTACTTGATGAAACGTGTATTGAGGGTATATAAAAGAACATCAAGGGGACCACAATGATGAAACAGGTGAGTTGAGTTCAAACTTTAggtaatgactccaacttattgata < 2:447907‑M1/139‑25 (MQ=255) aCGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATCAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttatagata > 1:185301‑M1/1‑119 (MQ=255) aatcgaatttttgAGGAGTGTCGCCAGAGCGCCGCGATTAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtg < 2:56877‑M1/137‑28 (MQ=255) tGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCTATGGGTACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgtttt > 1:235461‑M1/1‑112 (MQ=255) agctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggctgcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTAt < 1:388286‑M2/49‑1 (MQ=255) aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtcagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGAAAAGAATATGCTATGAaca > 1:247593‑M2/90‑142 (MQ=255) ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTta > 2:288049‑M2/86‑143 (MQ=255) agggacagcttatagaaacagtagccactggagtacctcaaaaacatcatcatacactaaatcagtaaggtggcagcagcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTtata < 1:202926‑M2/60‑1 (MQ=255) agggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAAAACTtata > 1:210050‑M2/84‑143 (MQ=255) ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATAtt > 2:53285‑M2/82‑143 (MQ=255) gTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgact < 2:320326‑M1/143‑56 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACCGGACAGAATATGCTATGAACCCTTATAATTa > 2:239822‑M2/80‑143 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaccaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACAATTATAGTTATc > 1:483012‑M2/78‑143 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCtt < 2:5524‑M2/68‑1 (MQ=255) tgatagaaacagaagccactggagcagctcaaaaacaccatcatacactaaatcagtaagttggcagcgtcaccCAAACTGTAGTACAATTCTCTCCAGTTTGGACAGGAAAGAATATGCTATGAACCCTCATATTTATCTtg > 2:551786‑M2/75‑143 (MQ=255) atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtacgttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTCGAACAGGAAAGAATATGCTATGAACACTTATAATTATATtggt > 1:237563‑M2/73‑143 (MQ=255) atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacgCAAACTGTAGTACAATTCTCGACAGTATGAACAGGAAAGAATATGCTAAGAACCCATATATTTATcttgat > 1:236633‑M2/73‑141 (MQ=255) tagtaacagaagctactgtagcacctcataaacatcattatacactatatcagtaagttggcagcatcacaCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTtggtg < 1:312688‑M2/72‑1 (MQ=255) tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTtggtg > 2:129328‑M2/72‑143 (MQ=255) aTGAAACGGGTATTCAGTGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg < 2:366510‑M1/143‑64 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCAAAGAACCATACAATATATCCTGgtggtg > 1:399545‑M2/69‑143 (MQ=255) agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATACTATGAACCCTTATATTTATCTTGGTGGTGCAAt > 1:339337‑M2/65‑143 (MQ=255) gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGAAGTACAATTCTCTCCAGTTTGAACAGGAACGAATATGCTATGAACCCTTATATTTAACCTGGTGATGCAATACtt > 2:357777‑M2/61‑143 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCACTACTTg > 2:236943‑M2/60‑143 (MQ=255) gggTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgcctccaacttcttgatagtgtttgaaggacagataatgctcgttgactttgtcatgcagctccaccgattat > 1:253600‑M1/1‑64 (MQ=255) atataAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgaga < 2:227291‑M1/143‑84 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTGGTACCATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCATATATTTAGCTTTGTGGTTCAAAACTTGCAGAGGTCATTg > 1:393650‑M2/48‑143 (MQ=255) caattccaccatcattatgtaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTGATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGt < 1:572071‑M2/98‑1 (MQ=255) atcatCACTGGGATCACAATGATGATACATGTTCGTTGAGTTCATACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcttgatgactttttcatgtagctccaccgattttgagaacgacagtg < 2:13726‑M1/141‑93 (MQ=255) tCAATGGGATCACACTTATTAAATAGGTGAGTTGAGTTCAAACTGTAgttaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt < 1:350356‑M1/143‑97 (MQ=255) aaTGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttgtggtcagataatgcacgacgactttgtcatgcagctcccccgattttgagaacaacagcgacgtcc > 2:267215‑M1/1‑45 (MQ=255) tacactaaatcattaaattgccatctgcaccCAAACTGTAGTACAATTCTCTCCAATTTGAACAGGAAAGAATATGCTATGACCCCTTAAATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGaa < 1:208124‑M2/112‑1 (MQ=255) cactaaatcagtaagttggcagcatcaccCATACTGTATTATAATTCTCTTCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGt < 1:291877‑M2/114‑1 (MQ=255) actaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTAGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGtt > 1:297324‑M2/29‑143 (MQ=255) aaaCAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggt > 2:479155‑M1/1‑27 (MQ=255) gggtggagttgagttcaaatTTTAggtaatggctttagcttattgatagtgtgttatgttcagataatgcccgatgtctttgtcatgcagctccaccgattttgagaacgacagcgccttccgttccagccttgccaggtgct < 2:329500‑M1/138‑120 (MQ=255) ttgtcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTa < 1:411505‑M2/129‑1 (MQ=255) aGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctg < 2:46267‑M1/143‑121 (MQ=255) cagcatctccCAAACTGTAGTACAATTCTCTCCATTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTAGCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACg < 1:30744‑M2/133‑1 (MQ=255) aagttgagttcAAACTTTAggtaatgacttcaacttattgatagtgttttatgttcagataatgcccgaagactaagtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc < 1:26438‑M1/142‑125 (MQ=255) ttgagttCTATCTGTAtgtcatgactccaacttattgatagtgttttatgttcagatacttcccgatgactttgtcatgcagctccaccgattttgagatcgacagcgacttccgtcccagccgtgccaggtgctgcctcaga < 2:275065‑M1/143‑128 (MQ=255) tggggttcaaaCTGGAggtaatgactccaacttattgatagtgttttatgttcagataatgcgcgatgacttcgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga < 2:22529‑M1/139‑128 (MQ=255) tacccAAACTGTAGTACAATTCTCTCTAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGGGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATg < 1:166113/139‑1 (MQ=255) tCAAAGTGTAggtaatgactccaacttatttatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg < 2:448601‑M1/143‑134 (MQ=255) tagtaTAATTCTTTTCATTTTTAATAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGCCATCTGTTg < 1:36889/143‑1 (MQ=255) | AAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGCCATCTGTTG > NC_000913/568135‑568417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |