| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 568,268 | IS1 (–) +9 bp | 100% | intergenic (+21/‑39) | renD → / → emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 29 (1.030) | 28/264 | NT | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 568268 = | 0 (0.000) | intergenic (+21/‑47) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 568276 | 0 (0.000) | 20 (0.720) | 17/262 | NT | 100% | intergenic (+29/‑39) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | = 1050545 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
CCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATC > NC_000913/1050413‑1050684 | ccTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATAAATAAGTTGGAGTCATTACCtacactttga < 2:448601‑M2/143‑11 (MQ=255) tGAATCTGAGGCAGCACCTGGAACGGCTGGGAAGGAAGTCGCTGTCGTTCACAAAATCGGTGGCGCTGCATGACAAAGTCATCGGGCATTCTCTGAACATAAAACACTATCAAGAAGTGGGAGTCATTACCGACAAtacgaaa > 2:547669/1‑140 (MQ=11) tCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACGAAGTCATCGCGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtccagtttgaacccca < 2:22529‑M2/143‑17 (MQ=255) tCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGATCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGAAGTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATGACAtacagatagaactcaa < 2:275065‑M2/143‑17 (MQ=255) tGAGGCAGCACCTGGCACAGCAGGGACGGAAGTCGCTGTCGATCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATACAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTga > 2:381825/1‑143 (MQ=255) gAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACTTAGTCTTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGAAGTCATTACCtaaagtttgaactcaactt < 1:26438‑M2/143‑20 (MQ=255) cagcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtacagtttgaactcaactcacct < 2:46267‑M2/143‑24 (MQ=255) agcaCCTGGCAAGGCTGGAACGGAAGGCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGACATCGGGCATTATCTGAACATAACACACTATCAATAAGCTAAAGCCATTACCtaaaatttgaactcaactccaccc < 2:329500‑M2/143‑25 (MQ=255) aCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtacagtttgaactcaactcacctgttt > 2:479155‑M2/1‑116 (MQ=255) gACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTGGAGATCAGGATAGTATACCTTGAgcc > 2:214953/1‑141 (MQ=255) ggACGTCGCTGTTGTTCTCAAAATCGGGGGAGCTGCATGACAAAGTCGTCGTGCATTATCTGACCACAAAACACTATCAATAAGTTGGAGTCATTACCtacagtttgaactcaactcacctgtttcatcattgtgttcccatt > 2:267215‑M2/1‑98 (MQ=255) aaGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTAACtacagtttgaactcaactcacctatttaataagtgtgatcccattga < 1:350356‑M2/143‑48 (MQ=255) tCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATcc > 2:69135/1‑143 (MQ=255) cactgTCGTTCTCAAAATCGGTGGAGCTACATGAAAAAGTCATCAAGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtacagtatgaactcaacgaacatgtatcatcattgtgatcccagtgatgat < 2:13726‑M2/141‑52 (MQ=255) gCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGGTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCtt < 1:186309/143‑1 (MQ=255) tctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtacagtttgaactcaactcacctgtttcatcattgtgttcccattgatgttcttttatat < 2:227291‑M2/143‑61 (MQ=255) tcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCGATAAGTTGGAGTCATTACCGACAATACGTACGCTTAAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtctc > 2:203106/1‑143 (MQ=255) cAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTcc < 2:20165/143‑1 (MQ=255) ataatcGGTGGAGCTGCATGACAAAGTCAACGAGCATTATCTGTCCTTCAAACACTATCAAGAAGTTGGAGGCATTACCtacagtttgaactcaactcacctgtttcatcattgtgttcccattgatgttcttttatataccc > 1:253600‑M2/3‑79 (MQ=255) gTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGCGTATAACATCCTTGTAACAACTACCTTTACTc > 2:179931/1‑143 (MQ=21) cTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTCTCAATACGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCg > 1:13337/1‑143 (MQ=255) tGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGATGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGc > 2:578653/1‑143 (MQ=255) cATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtacagtttgaactcaactcacctgtttcatcattgtgttcccattgatgttcttttatatacactgaatacccgtttcat < 2:366510‑M2/143‑81 (MQ=255) aggACCAAGTCATCTGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTg < 2:444915/141‑1 (MQ=255) aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATCCCGCTTGCACta > 2:1146/1‑143 (MQ=255) aGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtacagtttgaactcaactcacctgtttcatcattgtgttcccattgatgttcttttatataccctcaatacccgtttcatcgcggcac < 2:320326‑M2/143‑89 (MQ=255) aTTATCTGAACATAAAACAATATCAATAAGTTTGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTa < 1:214315/143‑1 (MQ=255) tATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAATTTTCTCGCGACACCTCATTTTTTTTATACAGAAAACACAATATACTGCGGGTAgg > 1:204413/1‑143 (MQ=18) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAAAATCATTGTGAAAAATACATTTCCTCATACAGCTTGCACTATATACTGAGGGTAGGac > 1:38947/1‑142 (MQ=37) cTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGaaa < 1:490307/143‑1 (MQ=255) aaaaCACTATCAATAAGTTGGAGTCATTACCtacagtttgaactcaactcacctgtttcatcattgtgtacccatagatgttcttttatataccctcaatacccgtttcatcgcggcactctggcgacactccttaaaaatca > 1:235461‑M2/1‑31 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCtacagtttgaactcaactcacctgtttcatcattgtgttcccattgatgttcttttatataccctcaatacccgtttaatcgcggcgctctggcgacactcctcaaaaattcgatt < 2:56877‑M2/143‑117 (MQ=255) tATCTATAAGTTGGAGTCATTACCtacagtttgaactcaactcacctgtttcatcattgtgttcccattgatgttctttgatataccctcaatacccgtttcatcgcggcactctggcgacactccttaaaaatcagattcgt > 1:185301‑M2/1‑24 (MQ=255) tATCAATAAGTTGGAGTCATTACCtaaagtttgaactcaactcacctgtttcatcattgtggtccccttgatgttcttttatataccctcaatacacgtttcatcaagtaactctggcgacactccttaaaaatcagatacca < 2:447907‑M2/143‑120 (MQ=255) tATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGaa < 2:13337/143‑1 (MQ=255) cAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAata > 2:476578/1‑143 (MQ=255) aGTCGGAGTCCTTACCGCCAATATGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCTCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGa < 2:55515/143‑1 (MQ=255) ggAGTACTTACGtacagcttgaactgaactcacgtgggtcatcatggtgtgctcattgaggttcttttatataccgtctatacccgtttcatcgcggcactctggcgacactccttaaaaatcagattcgtgctcacctttcc > 2:31847‑M2/1‑12 (MQ=255) gTCATTACCtacagtttgaactcaactcacctgtttcatcattatgttcccattgatgttcttttatatagtctcaataaccgttccatcgcggaactctggcgacacgccttaaagctcagattcatgctcagcgttccctc < 2:25386‑M2/143‑135 (MQ=255) gTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTAATTTGAGTATAACATCTTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTaa < 1:489213/143‑1 (MQ=255) aTTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGAAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTa > 1:461021/1‑143 (MQ=255) tACCtacagtttgaactcaactcacctgtttcatcattgtgttcccattgatgttcttttatataccctcaatacccgtttcatcgcggcactctggcgacactccttaaaaatcagattcgtgctcacctttccttcccatt > 2:475674‑M2/1‑4 (MQ=255) | CCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATC > NC_000913/1050413‑1050684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |