| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 23 (0.820) | 12 (0.460) | 12/246 | NT | 37.8% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 18 (0.690) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
CGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTA > NC_000913/4542848‑4543124 | tgaagCATCTCCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGc < 2:474862/139‑1 (MQ=255) cTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAAATGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtcgccccaattg < 2:506311‑M2/143‑13 (MQ=255) tcTCATTCTTCTCTCCAAAAACCACCTCATTTAATATAAACATCTATAAATATAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt < 1:43503/142‑1 (MQ=255) ccTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAACCTTGTCCGCGCTGCTTTCCTCTCTGTGTCAGGAtggccccaagtgaat < 1:96810‑M2/143‑16 (MQ=255) tcttctCTCCAAAAACCACCTCATGCAATATAATCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatt > 1:571511‑M2/1‑122 (MQ=255) tctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCACGATGCTTTCCTCTATAAGTCAAAAAGACCCCAAATGTTTCATCTTTTggg > 2:28165/1‑143 (MQ=255) ctcCAAAAACCAACTCATGCAATATAAACATCTATAAATAAAGATAAAAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGCTGCGTTCCTCTATGAGACAAAAtggccccaagtgttttatatgtagggg < 2:513045‑M2/143‑28 (MQ=255) aaataCCTCCTCATTCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACGGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttt > 1:58254‑M2/1‑112 (MQ=255) aaaaCCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATCAAGCCACCAAATAAACTGAAAAACTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtacccccaatcgtcctctacttatttgttttc < 2:47769‑M2/143‑33 (MQ=255) aaCCCCCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttttt > 2:486272‑M2/1‑109 (MQ=255) aaCCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttttt < 1:457459‑M2/143‑35 (MQ=255) tccttcTCATTCAATATAAATATTTATAAATAAAGATAAAAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtg < 1:64111/138‑1 (MQ=255) ccTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAACTGTTTCATCGTTTGGGCGCAAACTGTGCa > 2:58480/1‑143 (MQ=255) ccTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCATCCATGAGTCAAAATGGCAACACATGTTTCATCTTTTGGGGGACAACTGTGCa > 2:428778/1‑143 (MQ=255) gCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGCGTTg > 2:65589/1‑143 (MQ=255) gCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTATTAGGGGAAAAATGTGCAgaattg > 1:257893/1‑138 (MQ=255) cAATATAAACATCTATAAATAAAGATTACAATATATTTTTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatc > 1:1365‑M2/1‑97 (MQ=255) ataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaaac < 1:69331‑M2/143‑65 (MQ=255) aaGATAACAATAGAATATTAAGCCAACAAATAATCTGAATATTTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa < 1:460264/143‑1 (MQ=255) aGATAACGATAGAATATTAAGCCAACAAATAAACTGAAAAAGTGTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacctctt > 2:190788‑M2/1‑75 (MQ=255) tAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATAGCACCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaaa > 1:192537/1‑143 (MQ=255) gAATATTAAGCCACCAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg < 2:280733/143‑1 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCTAATGTTTCATCTATTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa < 1:141026/143‑1 (MQ=255) gCCAACAAATAAACTGAAAAAGTTTGTCCGTGATGCTTTCCTCTAAGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacctcttctctttttaatttttcgttt > 2:243344‑M2/1‑55 (MQ=255) caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAACTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTGTACAAAACAAAGTGTACAGAACGACTAccc > 2:10522/1‑143 (MQ=255) acaaATAAACTGAAAAAGTTTGTCGGCGATACTTTCCTCTAAGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAGAACTGTACCGTGTCAGCAGTCAAACTCGTTTCAAAAAAAAACTATACAGAACAACTGCCGAt > 2:191994/1‑143 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCCGTCAAACTCGTTTCCAAAACAAAGTGTACAAAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa > 1:559196/1‑143 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa < 2:22452/143‑1 (MQ=255) ttcttTCCTCTATGACTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaatcttcttctctttttaatttttcgtttatgagattatttctttcccataatccggcaaaa > 2:211732‑M2/3‑22 (MQ=255) ttCCTGTATGAGTCATATttgcacaaattgtcttatatatatttgttggtttaacgttattatcaagaagttaaatgaaacctcttctctttttaatttttcgtttatgagattattgctttcccataatccggcaaaacgag > 1:85864‑M2/1‑18 (MQ=255) ctctATGAGTCAAAATGGCCCCAAGTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagcagc < 2:96810/143‑1 (MQ=255) aGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAGTTAGAAATAGTTTTAGGAAAGGAAAGCAGCACGaaaa > 2:157082/1‑143 (MQ=255) gTCAAAATGGCTCTAAATGTTTCATCTTTAAGGTGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAAt < 1:544903/143‑1 (MQ=255) cAAAATTGCCCCAAATGTTTCATCTTTTGGTGGAAAACTGTGTAGTGTTGGCAGTCAATCTTGTAGACAAAACAGGGTGTGCAGAGCGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTa < 1:447317/143‑1 (MQ=255) | CGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTA > NC_000913/4542848‑4543124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |