New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4532946 =	56 (1.110)	3 (0.060)	3/252	NT	5.6%	coding (238/747 nt)	yjhP	KpLE2 phage‑like element; putative methyltransferase YjhP
	?	NC_000913	4532970 =	48 (0.990)					coding (214/747 nt)	yjhP	KpLE2 phage‑like element; putative methyltransferase YjhP

GTGCTGCGCATGAAGCCGGGCACCCGCATTCTTGACCTCGGCAGCGGCTCGGGCGAGATGCTCTGCACCTGGGCCAGGGATCATGGCATTACGGGGACTGGCATCGACATGAGTTCGCTCTTCACCGCGCAGGCAAAGCGTCGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4533093‑4532946 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcggTGAAGAGCGAACTCATGTCGATGCCAGTCCCCGTAATGCCATGATCCCTGGCCCAGGTGCAGAGCATCTCGCCCGAGCCGCTGCCGAGGTCAAGAATGCGGGTGCCCGGCTTCATGCGCAGCACGCGACCCAGCGTGG  >  NC_000913/4532970‑4533107                                                                                                                                                                                                                                                                                                GTGCTGCACATGATGCCGGGCACCCGCATTCGTGACCTCGGCAGCGGCTCGGGCGAGATGCTCTGCACCTGGGCCAGGGATCATGGCATTACGGGGACTGGCATCGACATGAGTTCGCTCTTCACCGCGCAGGCAAAGCGTCG                                                                                                                                                 <  1:762305/143‑1     TGCGCATGAAGCCGGGCACCCGCATTCTTGACCTCGGCAGCGGCTCGGGCGGGATGCTCTGCACCTGGGCCAGGGATCATGGCATTACGGGGACTCGCCTCGACATGAGTTCGCTCCTCCCCGCGCAGGCGAAGCACCGCGCG                                                                                                                                             >  2:335708/1‑143      GCGCACGAAGCCGGGCACCCGCATTCTTGCCCTCGGCAGCGGCTCGGTCGAGATGCTCTGCACCTGGGCCAGGGATCATGGCATGACGGGGACTGGCATCGACATGAGTTCGCTCTTCACCGCGCAGGCAAAGCGTCGCGCGG                                                                                                                                            <  2:726646/143‑1           TGAAGCCGGGCACCCGCATTCTTGACCTCGGCAGCGGCTCGGGCGAGATGCTCTGCACCTGGGCCAGGGATCATGGCATTACGGGGACTGGCATCGACATGAGTTCGCTCTTCACCGCGCAGGCAAAGCGTCGCGCGGcagag                                                                                                                                       >  1:338169/1‑138                                                                                                                       TCTTCACCGCGCAGGCAAAGCGTCGCGCGGTGAAGCGCGAACTCATGTCGATGCCAGTCCCCGTAATGCCATGACCCCTGGCCCAGGTGCAGCGCCTCCAGCCCGAGACGCTGCCGAGGCCAAGAATGCGGGTGCCCGcatgc                           >  2:362815/1‑138                                                                                                                            ACCGCGCAGGCAAAGCGTCGCGCGGTGAAGAGCGAACTCATGTCGATGCCAGTCCCCGTAATGCC                                                                                                    <  1:657039/65‑1                                                                                                                            ACCGCGCAGGCAAAGCGTCGCGCGGTGAAGAGCGAACTCATGTCGATGCCAGTCCCCGTAATGCC                                                                                                    >  2:657039/1‑65                                                                                                                                               GCGCGGTGAAGAGCGAACTCATGTCGATGCCAGTCCCCGTAATGCCATGATCCCTGGCCCAGGTGCAGAGCATCTCGCCCGAGCCGCTGCCGAGGTCAAGAATGCGGGTGCCCGGCTTCATGCGCAGCACGCGACCCAGCGTG   >  1:280871/1‑143                                                                                                                                                CGCGGTGCAGAGCGCGCTCATGTGGGTGCCAGCCCCCGCAATGCCATGGTCCCTGGCCCAGGTGCAGAGCATCTCGCCCGAGCCGCTGCCGAGGTCAAGAATGCGGGTGCCCGGCTTCATGCGCAGCACGCGACCCAGCGTGG  <  2:372658/143‑1                                                                                                                                                                                                                                                                                                GTGCTGCGCATGAAGCCGGGCACCCGCATTCTTGACCTCGGCAGCGGCTCGGGCGAGATGCTCTGCACCTGGGCCAGGGATCATGGCATTACGGGGACTGGCATCGACATGAGTTCGCTCTTCACCGCGCAGGCAAAGCGTCGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4533093‑4532946 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcggTGAAGAGCGAACTCATGTCGATGCCAGTCCCCGTAATGCCATGATCCCTGGCCCAGGTGCAGAGCATCTCGCCCGAGCCGCTGCCGAGGTCAAGAATGCGGGTGCCCGGCTTCATGCGCAGCACGCGACCCAGCGTGG  >  NC_000913/4532970‑4533107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.