| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4168341 | 33 (0.940) | 9 (0.280) | 7/244 | NT | 22.9% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 30 (0.930) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu | |||||
TGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACAC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCG > NC_000913/4168224‑4168502 | tGCTCACACAGATTGTTCGATAGAAAGTGAAAGGCAAGGCGTTTACGCGTTGGGGCTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAatt > 2:9210‑M2/1‑140 (MQ=255)tGCTCACACAGAGTGGCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAatt > 1:306608‑M2/1‑140 (MQ=255) tCACACAGGTTGTGTGATAGAAAGGGAACAGCAAGGCGTTTACGGGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttc > 2:447572‑M2/1‑137 (MQ=255) ccgcagggattgtctGATAGAACGCGAAAGGCAAGGCGTCTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttc > 2:159854‑M2/8‑137 (MQ=255) acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgt > 1:619908‑M2/1‑135 (MQ=255) acaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTGCACGAAAATATCACGCAACGCGTGATAAGCAattttcgggt < 1:577079‑M2/143‑11 (MQ=255) caGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGGATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTc < 1:656867/143‑1 (MQ=255) tGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCtt > 2:56517/1‑143 (MQ=38) tCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGGGATAAGCAATTTTCGTGTCCCCTTCg > 1:11468/1‑143 (MQ=255) tGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTc > 1:434867/1‑143 (MQ=38) tGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCACCTTCgcc > 2:2140/1‑141 (MQ=255) gATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCCTACAGGAAAATTTCACGCAAGGGGTGTTAGGAAATTTTCGTTTCCCCttggct > 1:170075/1‑139 (MQ=11) gATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCt < 1:209087/143‑1 (MQ=35) aTAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTGTTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTa > 2:80940/1‑143 (MQ=25) aTAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTa > 2:224613/1‑143 (MQ=35) tAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTag > 1:469772/1‑143 (MQ=35) aGAAAGTGAAAAGCAAGACGTTTACGCGTTGGGAGAGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTaga < 1:336501/143‑1 (MQ=18) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCACATTTCGTGTCCCCTTCGTCTagcg > 1:521879/1‑141 (MQ=16) aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTCGAgg > 2:24718/1‑143 (MQ=17) aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGc < 2:408753/143‑1 (MQ=32) gAAAAGCACGGTGTTTACTCCTTCGGAGTGAGGCTGAAGAGCATAAGGCCGTTCCCTTTCTATTAATGAAAGCTCA‑CCCTCCACGAAAATATCACGCAACGCGTGCTTTGCCAATGGCGTGTCTCCTTCTTCTAGAGGCCCAg < 2:146857/143‑1 (MQ=11) gAAAAGCACGGCGTTTACGCGTTCGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGACAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAg < 1:469744/143‑1 (MQ=12) aaaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCAGGCAACGCGTGATAAGCAATTGTCGTGTCCTCTTCGTCTAGAGGCCCAgg > 1:628143/1‑143 (MQ=12) aaaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAgg > 1:551418/1‑143 (MQ=32) agagAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactccca < 1:433664‑M2/143‑69 (MQ=255) cTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagagaacggccttattctcttcagcctcactcccaaagcgtaaacgccttgcttttc < 2:190345‑M2/143‑91 (MQ=255) tagtAATGGAAGCTCC‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACAC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTg < 2:14324/140‑1 (MQ=0) a‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtcgggtgagctttaattaatagaaagcgaacggacttattctcttcagcctcactcccaacgcgtaaacaccttactcttcactttctatcagacct < 1:516518‑M2/143‑107 (MQ=255) ccTACACGAAAATATCACGCAACGCGTGATAAGCTgttttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctaccagacactc < 1:610025‑M2/143‑109 (MQ=255) acacGAAAATATCACGCAACGCGTGATA‑‑‑tttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagccaatctgtgtgag < 1:406333‑M2/143‑115 (MQ=255) acGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgt < 2:589897‑M2/143‑114 (MQ=255) acGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgcctt < 1:188501‑M2/113‑84 (MQ=255) acGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgcctt > 2:188501‑M2/1‑30 (MQ=255) gAAAATATCACGCAACGCGTGATA‑‑‑tttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcacacaatctgtgtgagcact < 2:528387‑M2/143‑119 (MQ=255) ttatCACGCGTTGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACAC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGCTTGTGAGTGAAAGTCGCCGACCTTaa > 2:665221/2‑143 (MQ=255) atatCACGCATCGCGTTATAAGCAATTTTCGTGTCCCCTGCGTCTAGAGGCCCAGGACAC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTaa < 2:170075/143‑1 (MQ=12) atCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGGGGCCCAGGACAC‑CGCCCTTTCACGGCGGTAACATGGGGTCGAACCCACTTGGGTACGTCACTTGCGGGTTTGTGAGAGAAAGTGGCCGACCTTAata > 1:345714/1‑143 (MQ=11) tCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACAC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAatat > 1:412798/1‑143 (MQ=32) aCGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGCAG‑CCAGAGCGCGCGGCGTTGCAGGGGGTTGACCTACTGTCGAATCCCCTAGGGGACGCCACTTGCTGGGTTGTGAGTGTCAGTCGCCGACCTTAATAtct > 1:676159/1‑143 (MQ=2) aCGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACAC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATAtct > 1:255458/1‑143 (MQ=32) cGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCGAGGGGCCCAGGACAC‑CGCCCTTACACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAAGAtctc < 2:563607/143‑1 (MQ=255) aCGCGTGGTAATCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGCCAC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCaaaa < 2:273890/143‑1 (MQ=12) aCGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCATGACAC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCaaaa < 1:261604/143‑1 (MQ=17) aCGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACGC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCaaaa < 1:535783/143‑1 (MQ=17) cgcgTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACAC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGGCGACCTTAATATCTCaaagc > 2:56802/1‑141 (MQ=17) aTAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACAC‑CGCCCTTTCACGGCGGTAAAAGGGGCTCGAATCCCCTAGGGCACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACATTACTATCTCAAAACTCATCt > 2:674339/1‑143 (MQ=11) aGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACAC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTCGGGGACGCCACGTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTCATATCTCAAAACTCCTCTCCg > 2:319475/1‑143 (MQ=11) aGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACAC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACATTCATATCTCAAAGCTCGTCTTCg > 2:263320/1‑143 (MQ=255) | TGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCA‑CCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACAC‑CGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCG > NC_000913/4168224‑4168502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |