mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.1% | 167.1 / 110.2 | 162 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 74 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4414233 | 139 (2.020) | 8 (0.120) | 7/266 | 7.5 | 5.8% | intergenic (+42/‑42) | yjfC/aidB | putative acid‑‑amine ligase YjfC/putative acyl‑CoA dehydrogenase AidB |
| ? | NC_000913 | = 4414249 | 130 (2.000) | intergenic (+58/‑26) | yjfC/aidB | putative acid‑‑amine ligase YjfC/putative acyl‑CoA dehydrogenase AidB | |||||
| * | ? | NC_000913 | 227963 = | NA (NA) | 7 (0.110) | 7/272 | 7.6 | NA | noncoding (2205/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | 227978 = | NA (NA) | noncoding (2220/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 1460521 | 115 (1.670) | 8 (0.120) | 6/268 | 8.0 | 6.7% | coding (51/423 nt) | paaI | phenylacetyl‑CoA thioesterase |
| ? | NC_000913 | = 1460536 | 112 (1.710) | coding (66/423 nt) | paaI | phenylacetyl‑CoA thioesterase | |||||
| * | ? | NC_000913 | = 845711 | NA (NA) | 6 (0.090) | 6/268 | 8.0 | NA | noncoding (20/29 nt) | other | REPv78b |
| ? | NC_000913 | = 845722 | NA (NA) | noncoding (9/29 nt) | other | REPv78b | |||||
| * | ? | NC_000913 | = 4245187 | NA (NA) | 7 (0.110) | 6/270 | 8.1 | NA | noncoding (32/34 nt) | other | REP315c |
| ? | NC_000913 | = 4245217 | NA (NA) | noncoding (2/34 nt) | other | REP315c | |||||
| * | ? | NC_000913 | 4088431 = | 112 (1.620) | 5 (0.080) | 5/268 | 8.6 | 4.3% | coding (1425/1749 nt) | frvR | putative transcriptional regulator FrvR |
| ? | NC_000913 | 4088453 = | 114 (1.740) | coding (1403/1749 nt) | frvR | putative transcriptional regulator FrvR | |||||
| * | ? | NC_000913 | 1437201 = | 135 (1.960) | 6 (0.090) | 5/268 | 8.6 | 4.5% | noncoding (81/109 nt) | micC | small regulatory RNA MicC |
| ? | NC_000913 | 1437225 = | 125 (1.910) | noncoding (105/109 nt) | micC | small regulatory RNA MicC | |||||
| * | ? | NC_000913 | = 644029 | 55 (0.800) | 5 (0.080) | 5/266 | 8.6 | 8.9% | intergenic (‑62/+168) | rnk/rna | nucleoside diphosphate kinase regulator/RNase I |
| ? | NC_000913 | = 644042 | 51 (0.780) | intergenic (‑75/+155) | rnk/rna | nucleoside diphosphate kinase regulator/RNase I | |||||
| * | ? | NC_000913 | = 4040481 | NA (NA) | 5 (0.080) | 5/270 | 8.7 | 10.8% | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4040505 | 43 (0.620) | intergenic (+82/‑12) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 228744 | 50 (0.730) | 5 (0.080) | 5/270 | 8.7 | 9.5% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4040481 | NA (NA) | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA | |||||