New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	546199 =	41 (0.620)	3 (0.050)	3/258	NT	7.1%	coding (165/1050 nt)	allD	ureidoglycolate dehydrogenase
	?	NC_000913	546229 =	38 (0.590)					coding (135/1050 nt)	allD	ureidoglycolate dehydrogenase

TGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTCACGTTTTAACCCAGCCTGGCAGAGTTTATTCTCAATTAGCTGGTGGA  >  NC_000913/546059‑546341                                                                                                                                             |                                                                                                                                               tGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCg                                                                                                                                              >  1:448438/1‑143 (MQ=255) gacagatgaaaatcagtcgggaaacactccaccagctaattgagaataaactctgccaggctgggttaaaacgtgagcacgctgcaaccgtggctgaagtattggtttacgccgatgccagagggatccactctcatggcgcg                                                                                                                                              >  1:905325‑M1/141‑143 (MQ=255)        ttgtGATGGCATGTTCCATACCCGTTGTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCcgcg                                                                                                                                       <  2:144828/140‑1 (MQ=255)          ttGATGGTATGTTCCATACCCATTTTCGCCGCGGCCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCgta                                                                                                                                     <  2:327907/143‑1 (MQ=255)            gATGGCATGTTCCGTACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGATCGCGGTTGGTGCCGCCTTTTGGAATGCGTTCAGCgtagg                                                                                                                                   >  1:564018/1‑142 (MQ=255)             acgacATGTTCCATACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCgtagta                                                                                                                                  <  1:34918/139‑1 (MQ=255)              tGGCATGTTCCATACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGGTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGGGTAGTAt                                                                                                                                 >  1:488686/1‑143 (MQ=255)                 cATGTTCCATCCCCATTTTCGCCGCGCCCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTcc                                                                                                                              <  1:1070877/143‑1 (MQ=255)                 cATGTCCCATACCCATTTGCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTcc                                                                                                                              <  2:150158/143‑1 (MQ=255)                    gTTCCATGCCCAGTTGCGCCGGGGCCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCAcg                                                                                                                           <  1:276035/143‑1 (MQ=255)                    gTTCCATACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGACATTGGTTCCGCGCAGCATTCCAcc                                                                                                                           >  2:1281196/1‑142 (MQ=255)                        acgctccaccagctaattgagaataaactctggcaggcggggttaaaacgtgagcacgctgcaaccgtggctgaagtattggtttacgccgatgccagagggatccactctcatggcGCGGTGCGCGTAGTATTCCACGCGCa                                                                                                                       >  2:282013‑M1/118‑143 (MQ=255)                             ccATTTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTCCGCGCTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCCCGCGCCCcgcc                                                                                                                  >  2:1202408/1‑142 (MQ=255)                               aTTTCCCCCGCTACCTGTCCGGCGGCATTGCCGGCATGTAACATCGCCGAGCACGGCCCGGTTTCCTCAAGACGAATCTCCGGTCCGCGGTTGGCGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGcc                                                                                                                <  2:1035795/143‑1 (MQ=255)                                   tCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATga                                                                                                            <  1:1109215/143‑1 (MQ=255)                                      ccgcGACCTGTCCGGCGGCATTGTCGGCATGTAAAGTTGCCGAGCACGGCCCGGTTTCCTCAAGCCGAAGCTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGagag                                                                                                         <  2:826451/143‑1 (MQ=255)                                       cgcgCCCTGTCCCGCGGCATTGTCGGCATGTAACGTGGCCGGGCACGGCCCGGTTTCCTCAAGACGACACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGt                                                                                                        <  2:361408/143‑1 (MQ=255)                                        gcgACCTGGCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTg                                                                                                       <  2:242329/143‑1 (MQ=255)                                             cTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTCGTATTCCACGCGCACCGCGCCATGAGAGTGGATcc                                                                                                  >  1:505427/1‑143 (MQ=255)                                             cTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGCGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATcc                                                                                                  >  1:1272317/1‑143 (MQ=255)                                               gTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCct                                                                                                >  1:1224986/1‑143 (MQ=255)                                               gTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGATGGTGCCGCCTTTTGAAATGCGTTCCTCTTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCct                                                                                                >  1:1210779/1‑143 (MQ=255)                                                 ccGGCGGCATTGTCGGCATGTAAAAGTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCctct                                                                                              <  1:1052631/143‑1 (MQ=255)                                                    tctgccaggctgggttaaaacgtgagcacgctgcaaccgtggctgaagtattggtttacgccgatgccagagggatccactctcatggcGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGa                                                                                                     >  1:622852‑M1/90‑133 (MQ=255)                                                    tctgccaggctgggttaaaacgtgagcacgctgcaaccgtggctgaagtattggtttacgccgatgccagagggatccactctcatggcGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGa                                                                                                     <  2:622852‑M1/44‑1 (MQ=255)                                                        cATTCTCGGCGTGCACACTGGCCGCGCACGGCCCTGTTGCCTCAAGACGAAACTCCTGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCg                                                                                       <  2:827887/143‑1 (MQ=255)                                                           tGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCg                                                                                    <  1:214142/143‑1 (MQ=255)                                                             tCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTa                                                                                  >  1:45784/1‑143 (MQ=255)                                                                gCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGGCGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAAc                                                                               <  2:121678/143‑1 (MQ=255)                                                                 cATGTAACATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGCTCGCGGTGTGTGCCTCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAAcc                                                                              <  1:591820/143‑1 (MQ=255)                                                                   tGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTCCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCaa                                                                            <  1:973638/143‑1 (MQ=255)                                                                          ctGCCGACCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCa                                                                     <  1:622332/142‑1 (MQ=255)                                                                                   tcgtcccGGTTTCCTCCAGACGAAACTCGGGGTCGCGGTGGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTAGTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGtt                                                            <  1:261303/139‑1 (MQ=255)                                                                                      gCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGCCATCGGCGTAACCCAATACTTCAGCCACGGTTGCa                                                         >  2:59895/1‑143 (MQ=255)                                                                                         cGGTTTCCTCAAGACGAATCTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATGCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCg                                                      <  2:1173015/143‑1 (MQ=255)                                                                                                 tCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTCACg                                              >  2:843115/1‑143 (MQ=255)                                                                                                   aaGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTCACGtt                                            >  1:886882/1‑143 (MQ=255)                                                                                                   aaGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCACACGtt                                            >  2:732414/1‑143 (MQ=255)                                                                                                   aaGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCAGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCGTCGGCGTAAACCAATACTGCAGCCACGGTTGCAGCGTGCTCACGtg                                            >  1:971950/1‑142 (MQ=255)                                                                                                             tCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTCGCGTTTTAACCCAGc                                  >  1:215176/1‑143 (MQ=255)                                                                                                             tCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTCACGTTTTAACCCCGc                                  >  1:1229959/1‑143 (MQ=255)                                                                                                                 gTTCGCGGTTGGTGCCGCCTTTTGACATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTCACGTTTTAACCCAGCCTgg                              <  2:488580/143‑1 (MQ=255)                                                                                                                         ttGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTCACGTTTTAACCCAGCCTGGCAGAGttt                      >  1:451076/1‑143 (MQ=255)                                                                                                                          tGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTCACGTTTTAACCCAGCCTGGCAGAGTTTa                     <  2:1272317/143‑1 (MQ=255)                                                                                                                               ccgccTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCACTGGCATCGGCGTAAACCAATACTTCAGCCAAGGTTGCAGCGTGCTCACGTTTTAACCAAGCCTGGCAGAGTGTATtcac                >  2:401944/1‑141 (MQ=255)                                                                                                                                    ttttGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTAACGTATTAAGCCGGCCTGGCAGAGTTTATTCTCAATTa           >  1:531174/1‑143 (MQ=255)                                                                                                                                           aTGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTCACGTTTTAACCCAGCCTGGCAGAGTTTATTCTCAATTAGCtggtg    <  1:1121849/143‑1 (MQ=255)                                                                                                                                           aTGCGTTCCGCGTAGTATGCCCCGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTCACGTTTTAACCCAGCCTGGCAGAGTTTATTCTCAATTAGCtggtg    <  1:1184182/143‑1 (MQ=255)                                                                                                                                             GCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTCACGTTTTAACCCAGCCTGGCAGAGTTTATTCTCAATTAGCTGGTGGa  >  1:176046‑M1/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                               TGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAGCACGGCCCGGTTTCCTCAAGACGAAACTCCGGTTCGCGGTTGGTGCCGCCTTTTGAAATGCGTTCCGCGTAGTATTCCACGCGCACCGCGCCATGAGAGTGGATCCCTCTGGCATCGGCGTAAACCAATACTTCAGCCACGGTTGCAGCGTGCTCACGTTTTAACCCAGCCTGGCAGAGTTTATTCTCAATTAGCTGGTGGA  >  NC_000913/546059‑546341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.