New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3657430 =	45 (0.680)	3 (0.050)	3/256	NT	6.3%	coding (436/573 nt)	hdeD	acid‑resistance membrane protein
	?	NC_000913	3657468 =	45 (0.700)					coding (474/573 nt)	hdeD	acid‑resistance membrane protein

CACCGGAGCTGGGCATTTTTGCCATTGCGGCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGTTCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAA  >  NC_000913/3657290‑3657567                                                                                                                                              |                                                                                                                                          gtcacatcaagtgactatgatccgggtgacaaccggggtaattattgctgcttaacgaacaaactggcgacgctgaaaaggctggcggcgccaaatatcagttcaattcccaccagtgtggcaaccagcgatacagccaccAt                                                                                                                                          <  2:806962‑M1/2‑1 (MQ=255) gactgcaGCTGGGTATTTTTGTCATTGCGGAA‑TGTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGGGTTGGTCTCGTCAGCGTTCAATGAAAGGCAGGTGGCTACAGCTCGTTATTGGTGTGCTGGATATc                                                                                                                                         <  2:868657/137‑1 (MQ=255) ccccGGAGCTGGGCATTTTGGCCATTGCGGCA‑TTTTTTGCCGTTGTGTTCTGTGTTGCCGGTGTTATTCGCATGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTTGTTATTGGTGTGCTGGATATc                                                                                                                                         <  2:487499/141‑1 (MQ=255)  tcacatcaagtgactatgatccgggtgacaaccggggtaattattgctgcttaacgaacacacgggcgaagctgcacaggctggcggcgcaaaatatcagttaaattcccagcaaagcggaaaccagagtcaaagacaccacc                                                                                                                                         <  2:622269‑M1/3‑3 (MQ=255)  tcacatcaagtgactatgatccgggtgacaaccggggtaattattgctgcttaacgaacaaactggcgaagctgaacaggctggcggcgctaaatatcagttcaattcccaccagtgtggaaaccagcgttacagacaccATc                                                                                                                                         <  2:981738‑M1/3‑1 (MQ=255)   cacatcaagtgactatgatccgggtgacaaccggggtaattattgctgcttaacgaacaaactggcgaagctgaacaggctggcggcgctaaatatcagttcaattcccaccagtgaggaaaccagcgttacagacaccATCg                                                                                                                                        >  1:1178255‑M1/140‑143 (MQ=255)    cGGAGCTGGGCATTTTTGCCATTGCGGCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGCGTTGGTATCGTCAGCGTTCAATGAAAGGCAGATGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTc                                                                                                                                      >  2:459516/1‑143 (MQ=255)     ggAGCTGGGCATTTTTGCCATTGCGGCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCa                                                                                                                                     <  1:996081/143‑1 (MQ=255)        gCTGGGCATTTTTGCCATTGCGGCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTg                                                                                                                                  <  2:29636/143‑1 (MQ=255)        gCTGGGCATTTTTGCCATTGCGGCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTg                                                                                                                                  <  1:1073577/143‑1 (MQ=255)         cTGGGCATTTTTGCCATTGCGGCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGc                                                                                                                                 <  1:914988/143‑1 (MQ=255)          tGGGCATTTTTGCCATTGCGGCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGcc                                                                                                                                >  2:541030/1‑143 (MQ=255)            gtcATTTTTGCGATTGCGGCA‑TTTATTGCCGGTTTGTGCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTGTCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTg                                                                                                                              <  2:347196/141‑1 (MQ=255)              cATTTTTGCCATTGCGGCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGa                                                                                                                            <  2:1144937/143‑1 (MQ=255)              cATTTTTGCCATTGCGGCA‑TTTATTGCAGGCTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCCggc                                                                                                                            >  2:1225475/1‑142 (MQ=255)                 ttttGCCATTGCGGCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGatat                                                                                                                         >  2:963007/1‑143 (MQ=255)                        aTTGCGGCATTTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTg                                                                                                                   <  1:175838/143‑1 (MQ=255)                        aTTGCGGCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTgg                                                                                                                  <  1:854378/143‑1 (MQ=255)                           gCGGCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATCTCGGCATTGGCTCGCTATTCCTTGGTGc                                                                                                               >  2:203214/1‑143 (MQ=255)                              gCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGGGCAAc                                                                                                            >  1:65372/1‑143 (MQ=255)                                     ggtaattattgctgcttaacgaacaatctggtgaagctgaacaggctggcggcgctaaatatcagttcaattcccaccagtgtggaaaccagcgttacagacaccATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGAt                                                                                                      >  1:1252812‑M1/106‑143 (MQ=255)                                                  tCTGTGTTGCAGGGGTTATTCGCCTGATGAGGTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACg                                                                                         >  1:1219058/1‑143 (MQ=255)                                                    tgtgTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATCGTGTCTGTaagtct                                                                                       >  2:1280897/1‑139 (MQ=255)                                                         gaacaaactggcgaagctgaacaggctggcggcgctaaatatcagttcaattcccaccagtgtggaaaccagcgttacagacaccATCGTCATTGCCTGGATATTCCTTGGTGCAACGcc                                                                                                         <  1:611454‑M1/35‑1 (MQ=255)                                                         gaacaaactggcgaagctgaacaggctggcggcgctaaatatcagttcaattcccaccagtgtggaaaccagcgttacagacaccATCGTCATTGCCTGGATATTCCTTGGTGCAACGcc                                                                                                         >  2:611454‑M1/86‑120 (MQ=255)                                                          gCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTc                                                                                 <  1:881094/143‑1 (MQ=255)                                                            aGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTAGTTAGTGGTGTGCTGGATATCGTCAGTGCCTGGATATTCCTTGGTGCAACGCCGATGGGGTCTGTACCGCTGGTTTCca                                                                               >  2:356242/1‑143 (MQ=255)                                                            aGGGGTGATTCGCCTGATGGTGTGGTATCGTCAGCGTCCAATGATTGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCca                                                                               <  1:650445/143‑1 (MQ=255)                                                              gggTTATTCGCCTGATGAGTGCGTTTCGTCAGTGTGCATTGAAAGGCAGCGGGCTACAGCTCGTTATTGGTGTGCGGGTGATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCcaca                                                                             <  2:454630/143‑1 (MQ=255)                                                                gTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACt                                                                           >  1:312559/1‑143 (MQ=255)                                                                     tCGCCGGATGAGTTGGGATCGTCAGCGTGCAATGAAAGGCAGCTGGCTACAGCTCGTTATGGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAGCGCCGATGGTGTCTGTAACGCTGGTTTCCACACtggtgg                                                                      <  1:877550/143‑1 (MQ=255)                                                                     gcggcTGATGAGTGGGTGTCGGCGGCGTTCAATGAAAGGCAGCTGGCTACAGCGCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATAGTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACtggtgg                                                                      <  1:265515/139‑1 (MQ=255)                                                                       ccgtggtgaGTGGGTATGGTGCGCGTTCAATGAAAGCCAGCTGGCTACAGCTCGTTAGTGGTGTGCTGGATATCGGCATTGCCTGGATAGTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGa                                                                    <  2:70826/137‑1 (MQ=255)                                                                        ccTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATGGTCATTGCCTGGATGTTCCTTGGTGCAACGCCGCTGGTGTCTGTAAGGCTGGTGTCGCAACTGGTGAGaa                                                                   >  2:1012620/1‑143 (MQ=255)                                                                        ccTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCCGCGCCCGAATAATCATATGAGCAGCGCCGATGGTGTCTGCACCTCTGGTGTCCACACGGCTgggca                                                                   >  2:1244428/1‑141 (MQ=255)                                                                        ccTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGaa                                                                   >  1:26581/1‑143 (MQ=255)                                                                                gTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCAGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTg                                                           >  1:721459/1‑143 (MQ=255)                                                                                 ttGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTGCACACTGGTGGGAATTGAACTGa                                                          >  1:341636/1‑143 (MQ=255)                                                                                 ttGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGa                                                          >  1:153093/1‑143 (MQ=255)                                                                                 ttGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCATGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGGATTGAACTGa                                                          >  1:578961/1‑143 (MQ=255)                                                                                     tATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCCGTAACGCAGGCCTCCACACTGGTGGGAGTTGAACTggtcag                                                      >  2:822021/1‑138 (MQ=255)                                                                                        cGTCAGCGTTCAATGGATGGCACCTGGCTACAGCTCGTTCTTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAg                                                   <  1:355955/143‑1 (MQ=255)                                                                                          tCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAgcg                                                 >  2:397002/1‑143 (MQ=255)                                                                                                 tCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATGGTCGTTGCCTGGATGTTGCGAGGTGCAACGCCGATGGTGTCTGTGCCGCTGGGGTCCACACTGGTGGGGATGCAACTGGTATCTGGCCACGCCAg                                          >  2:929590/1‑143 (MQ=255)                                                                                                  gaaTGGAAGGCAGCTGGCTACAGCTCGTTACGTCGCTGCCGTATATCGTCATTGCCTGGATATTCCTTGGTGCAAGGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGc                                         <  2:262228/142‑1 (MQ=255)                                                                                                         aGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGTTCa                                  >  1:1085839/1‑143 (MQ=255)                                                                                                                   cTACAGCTCGTTATTGGTGTGCTGGATATCCAGCTGCGCCAGATATTCCTTGGTGCAACGCCGATGGATTCAGTGACTCACTGATCCAGACTGGGGGCGATTGAACTTATAGTTAGCGCCGCCAGCCGGGTCAGCTTCGCCAg                        >  2:627961/1‑143 (MQ=255)                                                                                                                          tctgtATTGTTTTGCTGTATATCGTCGTGGCCTGGATATTCCTTTGTGCTACGCCGATGTTGTCTGTAACTCTGGTTTCCACACTGGTGGCAATTGAACTGATATTTAGCGCCGCCATCCTGTTCAGCTTCGCCAGTTTGTTc                 <  2:350348/139‑1 (MQ=255)                                                                                                                          tCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGTTCAGCTTCGCCAGTTTGTTc                 <  1:893442/143‑1 (MQ=255)                                                                                                                             ttATTGGTGTGCTGGATATCGTCATTGCCTGGATATCCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGTTCAGCTTCGCCAGTTTGTTCGtt              <  2:1140191/143‑1 (MQ=255)                                                                                                                             ttATTGGTGTGCTGGATATCGTCAGTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACCAGTGGAAAAGGAACTGATATTTAGCGCCGCCAGCCTGTGCAGCTTCCCCAGTTTGTTCggt              >  2:1244246/1‑141 (MQ=255)                                                                                                                                ttGGTGTGCTGGATATCGTCATTGCCTTGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCTCACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGTTCAGCTTCGCCAGTTTGTTCGTTAag           <  1:699882/143‑1 (MQ=255)                                                                                                                                  ggggtgCTGGATATTGTCATTGCCTGGATATTCCGTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGTTCAGCTTCGCCAGTTTGTTCGTTAagca         <  2:424893/140‑1 (MQ=255)                                                                                                                                     gtgCTGGGTTTTGTGTTTTCCGGGATGTGCCTTGGGGGAGCGCCGATGGTGTCTGTAGCGCTGGTTTCCACACTGGTGGGAATTGAACTGATATGTGGCGCGGCCAGCCTGTTCAGCTTCGCCAGTTTGTTCGTTAAgcagca      <  2:308977/143‑1 (MQ=255)                                                                                                                                         gggATAGCGTCGTCGCTTGGATATTCCTGGGTGCATCGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGTTCAGCTTCGCCAGTTTGTTCGTTAAGCAGCaataa  <  2:172534/142‑1 (MQ=255)                                                                                                                                              |                                                                                                                                          CACCGGAGCTGGGCATTTTTGCCATTGCGGCA‑TTTATTGCCGGTTTGTTCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGTTCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAA  >  NC_000913/3657290‑3657567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.