New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3657430 =	45 (0.680)	3 (0.050)	3/256	NT	6.3%	coding (436/573 nt)	hdeD	acid‑resistance membrane protein
	?	NC_000913	3657468 =	45 (0.700)					coding (474/573 nt)	hdeD	acid‑resistance membrane protein

TCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCACCCGGATCATAGTCACTTGATGTGACTA  >  NC_000913/3657338‑3657610                                                                                                                                   |                                                                                                                                                tCTGTGTTGCAGGGGTTATTCGCCTGATGAGGTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACg                                                                                                                                     >  1:1219058/1‑143 (MQ=255)   tgtgTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATCGTGTCTGTaagtct                                                                                                                                   >  2:1280897/1‑139 (MQ=255)         gCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTc                                                                                                                             <  1:881094/143‑1 (MQ=255)           aGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTAGTTAGTGGTGTGCTGGATATCGTCAGTGCCTGGATATTCCTTGGTGCAACGCCGATGGGGTCTGTACCGCTGGTTTCca                                                                                                                           >  2:356242/1‑143 (MQ=255)           aGGGGTGATTCGCCTGATGGTGTGGTATCGTCAGCGTCCAATGATTGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCca                                                                                                                           <  1:650445/143‑1 (MQ=255)             gggTTATTCGCCTGATGAGTGCGTTTCGTCAGTGTGCATTGAAAGGCAGCGGGCTACAGCTCGTTATTGGTGTGCGGGTGATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCcaca                                                                                                                         <  2:454630/143‑1 (MQ=255)               gTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACt                                                                                                                       >  1:312559/1‑143 (MQ=255)                    tCGCCGGATGAGTTGGGATCGTCAGCGTGCAATGAAAGGCAGCTGGCTACAGCTCGTTATGGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAGCGCCGATGGTGTCTGTAACGCTGGTTTCCACACtggtgg                                                                                                                  <  1:877550/143‑1 (MQ=255)                    gcggcTGATGAGTGGGTGTCGGCGGCGTTCAATGAAAGGCAGCTGGCTACAGCGCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATAGTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACtggtgg                                                                                                                  <  1:265515/139‑1 (MQ=255)                      ccgtggtgaGTGGGTATGGTGCGCGTTCAATGAAAGCCAGCTGGCTACAGCTCGTTAGTGGTGTGCTGGATATCGGCATTGCCTGGATAGTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGa                                                                                                                <  2:70826/137‑1 (MQ=255)                       ccTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATGGTCATTGCCTGGATGTTCCTTGGTGCAACGCCGCTGGTGTCTGTAAGGCTGGTGTCGCAACTGGTGAGaa                                                                                                               >  2:1012620/1‑143 (MQ=255)                       ccTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCCGCGCCCGAATAATCATATGAGCAGCGCCGATGGTGTCTGCACCTCTGGTGTCCACACGGCTgggca                                                                                                               >  2:1244428/1‑141 (MQ=255)                       ccTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGaa                                                                                                               >  1:26581/1‑143 (MQ=255)                               gTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCAGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTg                                                                                                       >  1:721459/1‑143 (MQ=255)                                ttGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTGCACACTGGTGGGAATTGAACTGa                                                                                                      >  1:341636/1‑143 (MQ=255)                                ttGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGa                                                                                                      >  1:153093/1‑143 (MQ=255)                                ttGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCATGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGGATTGAACTGa                                                                                                      >  1:578961/1‑143 (MQ=255)                                    tATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCCGTAACGCAGGCCTCCACACTGGTGGGAGTTGAACTggtcag                                                                                                  >  2:822021/1‑138 (MQ=255)                                       cGTCAGCGTTCAATGGATGGCACCTGGCTACAGCTCGTTCTTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAg                                                                                               <  1:355955/143‑1 (MQ=255)                                         tCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAgcg                                                                                             >  2:397002/1‑143 (MQ=255)                                                tCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATGGTCGTTGCCTGGATGTTGCGAGGTGCAACGCCGATGGTGTCTGTGCCGCTGGGGTCCACACTGGTGGGGATGCAACTGGTATCTGGCCACGCCAg                                                                                      >  2:929590/1‑143 (MQ=255)                                                 gaaTGGAAGGCAGCTGGCTACAGCTCGTTACGTCGCTGCCGTATATCGTCATTGCCTGGATATTCCTTGGTGCAAGGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGc                                                                                     <  2:262228/142‑1 (MQ=255)                                                        aGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCa                                                                             >  1:1085839/1‑143 (MQ=255)                                                                  cTACAGCTCGTTATTGGTGTGCTGGATATCCAGCTGCGCCAGATATTCCTTGGTGCAACGCCGATGGATTCAGTGACTCACTGATCCAGACTGGGGGCGATTGAACTTATAGTTAGCGCCGCCAGCCGGG‑TCAGCTTCGCCAg                                                                   >  2:627961/1‑143 (MQ=255)                                                                         tctgtATTGTTTTGCTGTATATCGTCGTGGCCTGGATATTCCTTTGTGCTACGCCGATGTTGTCTGTAACTCTGGTTTCCACACTGGTGGCAATTGAACTGATATTTAGCGCCGCCATCCTGT‑TCAGCTTCGCCAGTTTGTTc                                                            <  2:350348/139‑1 (MQ=255)                                                                         tCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTc                                                            <  1:893442/143‑1 (MQ=255)                                                                            ttATTGGTGTGCTGGATATCGTCATTGCCTGGATATCCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGtt                                                         <  2:1140191/143‑1 (MQ=255)                                                                            ttATTGGTGTGCTGGATATCGTCAGTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACCAGTGGAAAAGGAACTGATATTTAGCGCCGCCAGCCTGT‑GCAGCTTCCCCAGTTTGTTCggt                                                         >  2:1244246/1‑141 (MQ=255)                                                                               ttGGTGTGCTGGATATCGTCATTGCCTTGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCTCACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAag                                                      <  1:699882/143‑1 (MQ=255)                                                                                 ggggtgCTGGATATTGTCATTGCCTGGATATTCCGTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAagca                                                    <  2:424893/140‑1 (MQ=255)                                                                                    gtgCTGGGTTTTGTGTTTTCCGGGATGTGCCTTGGGGGAGCGCCGATGGTGTCTGTAGCGCTGGTTTCCACACTGGTGGGAATTGAACTGATATGTGGCGCGGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAgcagca                                                 <  2:308977/143‑1 (MQ=255)                                                                                        gggATAGCGTCGTCGCTTGGATATTCCTGGGTGCATCGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCaataa                                             <  2:172534/142‑1 (MQ=255)                                                                                             atcggcgttgcaccaaggaatatccaggcaatgacgatGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCACCAGATTGTTCGTTAAGCAGCAATAATTAcc                                        >  1:1252812‑M2/39‑143 (MQ=255)                                                                                             agCGTCATTGTCTGGCTATTCCTCGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTTGCGCCGC‑AGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTAccc                                       >  2:339412‑M1/3‑143 (MQ=255)                                                                                                ggcgttgcaccaaggaatatccaggcaatgacgatGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTc                                                            >  2:611454‑M2/36‑120 (MQ=255)                                                                                                ggcgttgcaccaaggaatatccaggcaatgacgatGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTc                                                            <  1:611454‑M2/85‑1 (MQ=255)                                                                                                GTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCGGTTTGTTCGTTAAGCAGCCATCATTCCCCCg                                     <  1:741893‑M1/143‑1 (MQ=255)                                                                                                 tCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCgg                                    >  1:981738/1‑143 (MQ=255)                                                                                                   aTTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGtt                                  <  1:704085/143‑1 (MQ=255)                                                                                                   aTTGCCTGGATATTCCTTGCTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGtt                                  <  1:79251/143‑1 (MQ=255)                                                                                                        cTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAGGCGGCAATAATTACCCCGGTTGTcgc                             >  2:1268551/1‑141 (MQ=255)                                                                                                        cTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCACTAATTACCCCGGTTGTCAc                             >  2:594736/1‑143 (MQ=255)                                                                                                         tGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCG‑GGGAATTCGGTGTCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCAcc                            >  1:1270471/1‑143 (MQ=255)                                                                                                          ggATATTCCTTGCTGCGACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCAccc                           <  2:589863/143‑1 (MQ=255)                                                                                                             tatTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCACCCGGa                        <  1:969236/143‑1 (MQ=255)                                                                                                              cttCCTTGGTGGAACGGCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCACCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCACCCGGAt                       <  2:1110504/142‑1 (MQ=255)                                                                                                                    tGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTCTCCCCCGGACCATaat                 >  2:619788/1‑141 (MQ=255)                                                                                                                       tGCAACGGCGATGCTGTCTGAAGCGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCACCCGGATCATAGTCAc              <  1:201465/143‑1 (MQ=255)                                                                                                                        gCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCACCCGGATCATAGTCACt             >  1:194063/1‑143 (MQ=255)                                                                                                                         cAACGCCGATGGTGTCGGTAACGCTTGTTTCCACACTGGTGGGAATTGAACCGATATTTAGCGCCGCCAGCCTTT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCACCCGGATCATAGTCACtt            <  1:960006/143‑1 (MQ=255)                                                                                                                               cgatGGTGTCTGTAACGCTGGTTTCCTCACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCACCCGGATCATAGTCACTTGAtgtg      >  1:1178255‑M2/5‑143 (MQ=255)                                                                                                                                ggtGGTGTCTTTGACTCTGGTTTCCGCTTTGCTGGGAATTTAACTGATATTTTGCGCCGCCAGCCTGT‑GCAGCTTCGCCCGTGTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCACCCGGATCATAGTCACTTGATGTGa     <  2:622269‑M2/140‑1 (MQ=255)                                                                                                                                gatGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCACCCGGATCATAGTCACTTGATGTGa     <  2:981738‑M2/140‑1 (MQ=255)                                                                                                                                 atGGTGGCTGTATCGCTGGTTGCCACACTGGTGGGAATTGAACTGATATTTGGCGCCGCCAGCCTTT‑TCAGCGTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCACCCGGATCATAGTCACTTGATGTGAc    <  2:806962‑M2/141‑1 (MQ=255)                                                                                                                                   ggTTTCTGTAACGCTGGTTCCCACCCTGGTGGGAATTGAGCTGATATTTAGCGCCGCCAGCCTGT‑TCGGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCACCCGGATCATAGTCACATCAAGTGACTa  <  2:125148/143‑1 (MQ=255)                                                                                                                                   |                                                                                                                                                TCTGTGTTGCAGGGGTTATTCGCCTGATGAGTTGGTATCGTCAGCGTTCAATGAAAGGCAGCTGGCTACAGCTCGTTATTGGTGTGCTGGATATCGTCATTGCCTGGATATTCCTTGGTGCAACGCCGATGGTGTCTGTAACGCTGGTTTCCACACTGGTGGGAATTGAACTGATATTTAGCGCCGCCAGCCTGT‑TCAGCTTCGCCAGTTTGTTCGTTAAGCAGCAATAATTACCCCGGTTGTCACCCGGATCATAGTCACTTGATGTGACTA  >  NC_000913/3657338‑3657610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.