New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3886788NA (NA)6 (0.100) 6/250 NT NA noncoding (20/29 nt) other REPv281
?NC_000913 = 3886799 NA (NA)noncoding (9/29 nt) other REPv281

Only 100 of 124 total aligned reads displayed.

CATTATTCAGCAGCAGCTGATTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCGTGAAGTTGCCGA  >  NC_000913/3886647‑3886928
                                                                                                                                             |                                                                                                                                            
ctttattCTGCAGTATCTGATTTGCCGTGGTCTGGAAAATCGTGGCCTGCCTAGCCGCGAGAAGAAAAAATCCTGATTCGGTGTGTTTTCGCTAAAATAAGGTCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATa                                                                                                                                             <  2:38164/141‑1 (MQ=255)
cATTATTCAGCAGCAGCTGATTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAACTCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATa                                                                                                                                             >  2:975131/1‑143 (MQ=255)
   tattCAGCAGCAGCTGATTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGCGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGc                                                                                                                                          <  1:712696/143‑1 (MQ=255)
    attCAGCAGCAGCTGATTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCa                                                                                                                                         >  2:330456/1‑143 (MQ=255)
     ttCAGCAGCAGCTGATTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCAc                                                                                                                                        <  1:556376/143‑1 (MQ=255)
        gtcagcagcTGATTTCCCGTTGTCTGGAAGAGCGTTGCTTGCATAGTCGCGGTAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACcgc                                                                                                                                     <  2:493657/141‑1 (MQ=255)
                cTGTTTTACCTTTGTCTGTAAATGCGTTGCCTTCATAGCCGCGAGTAGAAATAATCCTGATTCTGTGAGTTTTCGCTGAAATAAGTGCAGTCAGTTTACCGCCTTTTTTCTTTTCTTAGGGCGTATAAGCACCGCGCATCCGc                                                                                                                             <  2:1066822/143‑1 (MQ=255)
                 tGATTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATgcgcggtgcttatccgcc                                                                                                                            <  1:735343‑M1/143‑19 (MQ=255)
                 tGATTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCatccgcc                                                                                                                            <  1:892848‑M2/143‑8 (MQ=255)
                  gATTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCca                                                                                                                           >  2:726273/1‑143 (MQ=255)
                  gATTTACCGTGGGCTGGCACAACGTGGCCTGCGTAGCCGCGAGAAGAAAAAGTCCTGATGCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATgcgcggtgcttatccgccc                                                                                                                           <  2:922068‑M1/143‑20 (MQ=255)
                   atgtACCGTGGTCTGGAAAAACGTGGCCTGCATGGCCGCGAGAAGAAAAAATCCTGGTTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCcac                                                                                                                          <  2:235900/140‑1 (MQ=255)
                   aTTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCcac                                                                                                                          >  2:484905/1‑143 (MQ=255)
                    tttACCGTGGCCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCACCTGCCCGCCCTTTTTTTTGTTGTAGTGCGGATAAGCACCGCGCATCCGCcaca                                                                                                                         <  1:1004343/143‑1 (MQ=255)
                      tACCGTGGTCTGGAAAAACGAGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCcacaca                                                                                                                       >  1:570566/1‑143 (MQ=255)
                       aCCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACaa                                                                                                                      >  1:883132/1‑143 (MQ=255)
                        ccGTGGTCTGGGAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACaaa                                                                                                                     <  2:38901/143‑1 (MQ=255)
                          gTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATGCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATgcgcggtgcttatccgccctacgaaaa                                                                                                                   <  1:1067876‑M1/143‑28 (MQ=255)
                             gTCTGGAAAAACGTGGCCTGCATAGGCGTGGGCAGAAAAAAGCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAAc                                                                                                                <  1:232859/143‑1 (MQ=255)
                                tGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGGCACACAAAGCCACAgg                                                                                                             >  2:714045/1‑143 (MQ=255)
                                 ggAAGAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGCGAGTTTTCGCGAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGa                                                                                                            <  2:446041/143‑1 (MQ=255)
                                 ggAAAAACGTGTCCTGCATAGCCGCGAGAGGCAAAAATCCTAATTCGGTGAGTTTTCGCTAAACTAAGGTCGTTCAGTTAACCGCCTTTTTTCTTGTAGTAGCTCGTATAGGCTGCGCGCATCCGCCCCACAAAGCCAcccga                                                                                                            >  2:883306/1‑139 (MQ=255)
                                  gcacaaCGCGGCCTGCATAGCCGCGAGAAGAAAAAAGCCTGATTCGGTGAGTTTTCGCTAAAATACGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGaa                                                                                                           <  1:253536/139‑1 (MQ=255)
                                  gAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGCGCTTTCGCTAAAATAAGGGCGGTAAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGaa                                                                                                           >  2:574691/1‑143 (MQ=255)
                                  gAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGaa                                                                                                           >  1:1194497/1‑143 (MQ=255)
                                  gAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGaa                                                                                                           >  1:867569/1‑143 (MQ=255)
                                   aaaaaCGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAc                                                                                                          <  1:659437/143‑1 (MQ=255)
                                   aaaaaCGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATGCGGTGAGTCTTCGCTAAAATAAGCGCGGGCAGTTGACCGCCTTTTTTCAAAACGTCGTTGTCATAATCACCGCGCCTCCGCCACAAAAAGAAACAGGaaa                                                                                                          >  2:1240509/1‑142 (MQ=255)
                                    aacaCGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAca                                                                                                         <  1:555475/140‑1 (MQ=255)
                                    aaaaCGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACCAAGCAACAGGcaca                                                                                                         >  2:293046/1‑143 (MQ=255)
                                    aaaaCGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAca                                                                                                         >  1:1240468/1‑143 (MQ=255)
                                     aaaCGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAcat                                                                                                        >  2:1160609/1‑143 (MQ=255)
                                        cGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAcatcat                                                                                                     <  1:330456/143‑1 (MQ=255)
                                        cGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAcatcat                                                                                                     <  1:1172133/143‑1 (MQ=255)
                                        cGTCGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAcatcat                                                                                                     <  2:255315/143‑1 (MQ=255)
                                            gCCTGCATAGCCGCGAGAAGAAAATATCCTGATTCGCTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCTACACAAAGCAACCGGAACATCATGAGc                                                                                                 <  2:1124403/143‑1 (MQ=255)
                                              cTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGa                                                                                               <  1:101749/143‑1 (MQ=255)
                                              cTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGACACACATAGCAACAGGAACATCAGGAGCGa                                                                                               >  2:1171047/1‑143 (MQ=255)
                                              cTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCCCCTTTTGTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGa                                                                                               <  1:734068/143‑1 (MQ=255)
                                              cTGCATAGCCGCGAAAAGAAAAAATCCTGAATCGGTGAGATTTCGCTAAAATAAGGGAGGTCAGTTGACAGCCCTTTTTCTTTTCGTAGGGCGGCAAAGCACCGATCATCCGCAAAACCAAGGAACAAGAACAACATCAgaga                                                                                               >  2:1060627/1‑143 (MQ=255)
                                                   tAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATGATGAGCGATAATg                                                                                          >  2:309006/1‑143 (MQ=255)
                                                      ccGCGAGAAGAAAAAATCCTGCTTCGGTGAGTTTTCGCTAAAATAATGGCGGGCAGTTGACCGCCTTTTTTCTTTTCGTAGGTAGGATAAGCACCGCGCATCCGCCACACAACGCAACAGGAACATCATCAGCGACACTGacg                                                                                       >  1:112395/1‑142 (MQ=255)
                                                        gcgAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACt                                                                                     <  1:385115/143‑1 (MQ=255)
                                                           gataaaaaaaaTCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATc                                                                                  <  1:140614/138‑1 (MQ=255)
                                                           agaagaAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATc                                                                                  >  1:899377/1‑143 (MQ=255)
                                                            gaagagAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCg                                                                                 <  2:52560/143‑1 (MQ=255)
                                                            gaagaaAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACTGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCg                                                                                 <  2:571607/143‑1 (MQ=255)
                                                             aagaaAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGt                                                                                <  1:542023/143‑1 (MQ=255)
                                                             aagaaAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGt                                                                                >  2:991274/1‑143 (MQ=255)
                                                              agagaggaTCCGGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTGTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTa                                                                               <  2:191716/136‑1 (MQ=255)
                                                              agaaAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTa                                                                               <  2:708269/143‑1 (MQ=255)
                                                              agaaAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTa                                                                               <  2:1261562/143‑1 (MQ=255)
                                                              agaaAAAATCCTGAGTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCGGTTGTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTa                                                                               <  2:766039/143‑1 (MQ=255)
                                                                aaaaaaTCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATgcgcggtgcttatccgccctacgaaaagaaaaaag                                                                                                           >  1:85955‑M1/1‑78 (MQ=255)
                                                                aaaaaaTCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCACCTTTTTTCTTTTCGTAGGGCGGATgcgcggtgcttatccgccctacgaaaagaaaaaag                                                                                                           <  2:85955‑M1/113‑36 (MQ=255)
                                                                 aaaaaTCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGcc                                                                            >  1:1220164/1‑143 (MQ=255)
                                                                  aaaaTCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCTTTTTTTCTTTTCGTATGGTGTATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATATTGACACTATCGTAGccc                                                                           <  1:1072130/143‑1 (MQ=255)
                                                                              cGGTGAGTTTTCGCTAAAAGAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTc                                                               <  2:464187/143‑1 (MQ=255)
                                                                                gTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCg                                                             >  2:1130790/1‑143 (MQ=255)
                                                                                     ttttCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCAGCGCGCATACGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTACCCCAGGCCACGACTCCGGGACg                                                        >  2:1248095/1‑143 (MQ=255)
                                                                                     ttttCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGaag                                                        >  1:1056545/1‑141 (MQ=255)
                                                                                       ttCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACCCGGACAGTGGTACAGTGTGAGCGATAAAGACACTATCGTAGCCCAGGCCACGCCTCGGGGGCGTg                                                      >  1:1269921/1‑143 (MQ=255)
                                                                                       ttCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACACCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTg                                                      >  2:533139/1‑143 (MQ=255)
                                                                                        tCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTgg                                                     <  2:338483/143‑1 (MQ=255)
                                                                                          gCTAAAATAAGGGCGGTCAGTTGACCGCCTTGTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTggcg                                                   >  1:573269/1‑143 (MQ=255)
                                                                                            tAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGCCGTggcggc                                                 >  1:1052634/1‑143 (MQ=255)
                                                                                            tAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCAGGACGCggcggc                                                 >  2:739968/1‑143 (MQ=255)
                                                                                              aaaTAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGAGCTGGCGGCGt                                               >  1:1033256/1‑143 (MQ=255)
                                                                                               cattaGGGCTGTCAGGTGCCCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGTAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGtt                                              <  2:1143599/139‑1 (MQ=255)
                                                                                               aaTAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGtt                                              <  2:365464/143‑1 (MQ=255)
                                                                                                aTAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGCCGTGGCGGCGTTg                                             >  2:186216/1‑143 (MQ=255)
                                                                                                 tAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTgg                                            <  2:222912/143‑1 (MQ=255)
                                                                                                 tAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCATAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTgg                                            <  2:406448/143‑1 (MQ=255)
                                                                                                     ggCGGGCAGTTCACCGCCTCTTTTCTTTGCGTAGGCCGGATAAGCACCGCGCATCCGCCACACACTGCAACGGGAACATCCTTAGCGCTAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATc                                        <  2:452626/143‑1 (MQ=255)
                                                                                                      gCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGCACATCATGAGCGATAATGACAGTACCGTAGCCCAGGCCCCGCCTCCGGGCCGTAGCGCCGTTGACATcc                                       >  2:318540/1‑143 (MQ=255)
                                                                                                        gggcAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTg                                     <  2:1199571/140‑1 (MQ=255)
                                                                                                        ggTCAGTTGCCCGCTCTTGTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTg                                     <  2:647844/143‑1 (MQ=255)
                                                                                                         gTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTgc                                    <  2:599364/143‑1 (MQ=255)
                                                                                                          tCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTgcg                                   >  1:1110515/1‑143 (MQ=255)
                                                                                                              ttGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCAtc                               >  2:1019785/1‑143 (MQ=255)
                                                                                                                gACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTCGCGGCGTTTGCATCCTGCGCAtctc                             >  2:559274/1‑143 (MQ=255)
                                                                                                                 gccGCCTTTGTGCTGTTCGGAGGGCGGAGAAGCCCCGCGCAGCCGCCACACCAGGCGACAGGAACATCATGGGCGATAAGGGCCCCACGGTAGCCCAGGCCACGCCGCCGGGACGTGGCGGCGTTGGCATCCGGCGCATCTcc                            <  2:154932/142‑1 (MQ=255)
                                                                                                                    gCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCAGGACGTGCCGGCGTTGGCATCCTGCGCATCTCCGGc                         >  2:59747/1‑143 (MQ=255)
                                                                                                                    gCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCAGCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGc                         <  2:74258/143‑1 (MQ=255)
                                                                                                                      cTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCatccgccctacgaaaagaaaaaaggtggtcaactgaccgcccttattttagcgaaaactcaccgaatcaggatttttt                                                     <  2:85955‑M2/113‑79 (MQ=255)
                                                                                                                      cTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCatccgccctacgaaaagaaaaaaggcggtcaactgaccgcccttattttagcgaaaactcaccgaatcaggatttttt                                                     >  1:85955‑M2/1‑35 (MQ=255)
                                                                                                                      cTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAGCAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCtt                       <  2:691355/143‑1 (MQ=255)
                                                                                                                          tctcttttcGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCaaa                   <  1:838582/141‑1 (MQ=255)
                                                                                                                           ttcttttcGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCATTCGCATCCTGCGCATCTCCGGCTTCAAAg                  <  2:157284/143‑1 (MQ=255)
                                                                                                                              ttttcGTAGGGCGGATAAGCACCGCGCatccgccctacgaaaagaaaaaaggcggtcaactgaccgcccttattttagcgaaaactcaccgcatcaggattttttcttctcgcggctatgcaggccacgtttttccagaccac               <  1:1067876‑M2/143‑117 (MQ=255)
                                                                                                                               tttcGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCg              <  1:1160609/143‑1 (MQ=255)
                                                                                                                                ttcGTAGGGCGGATAAGCACCGCGCatccgccctacgaaaagaaaaaaggcggtcaactgaccgcccttattttagcgaaaactcaccgcatcaggattttttcttctcgcgactatgcaggccacgcgccaccagaccacgg             <  2:440936‑M2/143‑119 (MQ=255)
                                                                                                                                   ggaGGGCGGATAAGCACCGCGCGTCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCGTGaa          <  2:739996/141‑1 (MQ=255)
                                                                                                                                    tAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCGTGAAg         >  1:685148/1‑143 (MQ=255)
                                                                                                                                    tAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCGCCGGCGTCAAAGCCCGTGAAg         >  1:690342/1‑143 (MQ=255)
                                                                                                                                      gggCGGATAAGCACCGCGCatccgccctacgaaaagaaaaaaggcggtcaactgaccgcccttattttagcgaaaactcaccgcatcaggactttttcttctcgcggctacgcaggccacgttgtgccagcccacggtaaatc       <  2:922068‑M2/143‑125 (MQ=255)
                                                                                                                                       ggCGGATgcgcggtgcttatccgccctacgaaaagaaaaaaggcggtcaactgaccgcccttattttagcgaaaactcaccgaatcaggattttttcttctcgcggctatgcaggccacgtttttccagaccacggtaaatca      <  1:892848‑M1/143‑137 (MQ=255)
                                                                                                                                       ggCGGATAAGCACCGCGCatccgccctacgaaaagaaaaaaggcggtcaactgaccgcccttattttagcgaaaactcaccgaatcaggattttttcttctcgcggctatgcaggccacgtttttccagaccacggtaaatca      <  1:735343‑M2/143‑126 (MQ=255)
                                                                                                                                       ggCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTCAAAAGCCCGTGAAGTTg      >  2:1056668/1‑143 (MQ=255)
                                                                                                                                        gCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGATTCAACGCTCGTGAAGTTGc     >  1:469455/1‑143 (MQ=255)
                                                                                                                                             |                                                                                                                                            
CATTATTCAGCAGCAGCTGATTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCGTGAAGTTGCCGA  >  NC_000913/3886647‑3886928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.