New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3886788NA (NA)6 (0.100) 6/250 NT NA noncoding (20/29 nt) other REPv281
?NC_000913 = 3886799 NA (NA)noncoding (9/29 nt) other REPv281

Only 100 of 110 total aligned reads displayed.

CTGATTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCGTGAAGTTGCCGAAACCGTGCTGGGT  >  NC_000913/3886663‑3886941
                                                                                                                                        |                                                                                                                                              
cTGTTTTACCTTTGTCTGTAAATGCGTTGCCTTCATAGCCGCGAGTAGAAATAATCCTGATTCTGTGAGTTTTCGCTGAAATAAGTGCAGTCAGTTTACCGCCTTTTTTCTTTTCTTAGGGCGTATAAGCACCGCGCATCCGc                                                                                                                                          <  2:1066822/143‑1 (MQ=255)
 tGATTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCatccgcc                                                                                                                                         <  1:892848‑M2/143‑8 (MQ=255)
   atgtACCGTGGTCTGGAAAAACGTGGCCTGCATGGCCGCGAGAAGAAAAAATCCTGGTTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCcac                                                                                                                                       <  2:235900/140‑1 (MQ=255)
   aTTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCcac                                                                                                                                       >  2:484905/1‑143 (MQ=255)
    tttACCGTGGCCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCACCTGCCCGCCCTTTTTTTTGTTGTAGTGCGGATAAGCACCGCGCATCCGCcaca                                                                                                                                      <  1:1004343/143‑1 (MQ=255)
      tACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCcacaca                                                                                                                                    <  2:749931/143‑1 (MQ=255)
      tACCGTGGTCTGGAAAAACGAGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCcacaca                                                                                                                                    >  1:570566/1‑143 (MQ=255)
       aCCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACaa                                                                                                                                   >  1:883132/1‑143 (MQ=255)
        ccGTGGTCTGGGAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACaaa                                                                                                                                  <  2:38901/143‑1 (MQ=255)
        ccGTGGTCTGGAAAAACGTGGCCTGCAGAGGCGCGAGAAGAAAAAATCCTGGTTCGGTGAGTTTTCGCTAAAATAACGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACaaa                                                                                                                                  <  2:150029/143‑1 (MQ=255)
             gTCTGGAAAAACGTGGCCTGCATAGGCGTGGGCAGAAAAAAGCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAAc                                                                                                                             <  1:232859/143‑1 (MQ=255)
                tGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGGCACACAAAGCCACAgg                                                                                                                          >  2:714045/1‑143 (MQ=255)
                tGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAgg                                                                                                                          >  2:1123335/1‑143 (MQ=255)
                 ggAAGAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGCGAGTTTTCGCGAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGa                                                                                                                         <  2:446041/143‑1 (MQ=255)
                 ggAAAAACGTGTCCTGCATAGCCGCGAGAGGCAAAAATCCTAATTCGGTGAGTTTTCGCTAAACTAAGGTCGTTCAGTTAACCGCCTTTTTTCTTGTAGTAGCTCGTATAGGCTGCGCGCATCCGCCCCACAAAGCCAcccga                                                                                                                         >  2:883306/1‑139 (MQ=255)
                  gAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGCGCTTTCGCTAAAATAAGGGCGGTAAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGaa                                                                                                                        >  2:574691/1‑143 (MQ=255)
                  gAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGaa                                                                                                                        >  1:1194497/1‑143 (MQ=255)
                  gAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGaa                                                                                                                        >  1:867569/1‑143 (MQ=255)
                   aaaaaCGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAc                                                                                                                       <  1:659437/143‑1 (MQ=255)
                   aaaaaCGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATGCGGTGAGTCTTCGCTAAAATAAGCGCGGGCAGTTGACCGCCTTTTTTCAAAACGTCGTTGTCATAATCACCGCGCCTCCGCCACAAAAAGAAACAGGaaa                                                                                                                       >  2:1240509/1‑142 (MQ=255)
                    aacaCGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAca                                                                                                                      <  1:555475/140‑1 (MQ=255)
                    aaaaCGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACCAAGCAACAGGcaca                                                                                                                      >  2:293046/1‑143 (MQ=255)
                    aaaaCGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAca                                                                                                                      >  1:1240468/1‑143 (MQ=255)
                        cGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAcatcat                                                                                                                  <  1:330456/143‑1 (MQ=255)
                        cGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAcatcat                                                                                                                  <  1:1172133/143‑1 (MQ=255)
                        cGTCGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAAcatcat                                                                                                                  <  2:255315/143‑1 (MQ=255)
                            gCCTGCATAGCCGCGAGAAGAAAATATCCTGATTCGCTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCTACACAAAGCAACCGGAACATCATGAGc                                                                                                              <  2:1124403/143‑1 (MQ=255)
                              cTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGa                                                                                                            <  1:101749/143‑1 (MQ=255)
                              cTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGACACACATAGCAACAGGAACATCAGGAGCGa                                                                                                            >  2:1171047/1‑143 (MQ=255)
                              cTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCCCCTTTTGTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGa                                                                                                            <  1:734068/143‑1 (MQ=255)
                              cTGCATAGCCGCGAAAAGAAAAAATCCTGAATCGGTGAGATTTCGCTAAAATAAGGGAGGTCAGTTGACAGCCCTTTTTCTTTTCGTAGGGCGGCAAAGCACCGATCATCCGCAAAACCAAGGAACAAGAACAACATCAgaga                                                                                                            >  2:1060627/1‑143 (MQ=255)
                                   tAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATGATGAGCGATAATg                                                                                                       >  2:309006/1‑143 (MQ=255)
                                        gcgAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACt                                                                                                  <  1:385115/143‑1 (MQ=255)
                                           gataaaaaaaaTCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATc                                                                                               <  1:140614/138‑1 (MQ=255)
                                           agaagaTAAAATCCTGCTTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATc                                                                                               <  2:294307/143‑1 (MQ=255)
                                           agaagaAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATc                                                                                               >  1:899377/1‑143 (MQ=255)
                                           agaagaAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATc                                                                                               <  2:570566/143‑1 (MQ=255)
                                           agaaaaAAGAAGCCTGATTCGTGGAGGTGTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATc                                                                                               <  1:1062914/143‑1 (MQ=255)
                                            gaagagAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCg                                                                                              <  2:52560/143‑1 (MQ=255)
                                            gaagaaAGAATCCTGATTCGGTGAGTTTTCTCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGGACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCg                                                                                              <  2:468053/143‑1 (MQ=255)
                                            gaagaaAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACTGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCg                                                                                              <  2:571607/143‑1 (MQ=255)
                                             aagaaAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGt                                                                                             <  1:542023/143‑1 (MQ=255)
                                             aagaaAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGt                                                                                             >  2:991274/1‑143 (MQ=255)
                                              agagaggaTCCGGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTGTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTa                                                                                            <  2:191716/136‑1 (MQ=255)
                                              agaaAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTa                                                                                            <  2:708269/143‑1 (MQ=255)
                                              agaaAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTa                                                                                            <  2:1261562/143‑1 (MQ=255)
                                              agaaAAAATCCTGAGTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCGGTTGTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTa                                                                                            <  2:766039/143‑1 (MQ=255)
                                                 aaaaaTCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGcc                                                                                         >  1:1220164/1‑143 (MQ=255)
                                                  aaaaTCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCTTTTTTTCTTTTCGTATGGTGTATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATATTGACACTATCGTAGccc                                                                                        <  1:1072130/143‑1 (MQ=255)
                                                      tCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCACCAGGCACATCATGAGCGATAATGACACTATCGTAGCCCAgca                                                                                    >  1:1119178/1‑141 (MQ=255)
                                                       ccTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATGATGAGCGATGATGACAACATCGAAGCGCAGGcc                                                                                   >  1:55952/1‑143 (MQ=255)
                                                           aTTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACCCTAACGTCGCCCAGGCCACGc                                                                               >  2:603839/1‑143 (MQ=255)
                                                              cGGTGAGTTTTCGCTAAAAGAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTc                                                                            <  2:464187/143‑1 (MQ=255)
                                                                gTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCg                                                                          >  2:1130790/1‑143 (MQ=255)
                                                                  gAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCggg                                                                        >  1:171709/1‑143 (MQ=255)
                                                                     ttttCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCAGCGCGCATACGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTACCCCAGGCCACGACTCCGGGACg                                                                     >  2:1248095/1‑143 (MQ=255)
                                                                     ttttCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGaag                                                                     >  1:1056545/1‑141 (MQ=255)
                                                                       ttCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACCCGGACAGTGGTACAGTGTGAGCGATAAAGACACTATCGTAGCCCAGGCCACGCCTCGGGGGCGTg                                                                   >  1:1269921/1‑143 (MQ=255)
                                                                       ttCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACACCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTg                                                                   >  2:533139/1‑143 (MQ=255)
                                                                        tCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTgg                                                                  <  2:338483/143‑1 (MQ=255)
                                                                          gCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTggcg                                                                >  1:707341/1‑143 (MQ=255)
                                                                          gCTAAAATAAGGGCGGTCAGTTGACCGCCTTGTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTggcg                                                                >  1:573269/1‑143 (MQ=255)
                                                                           cTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATGCGCCACGCAAAGCAACAGGAACAGCATGAGCGATCATGACACTATCGTAGCCCGGGCCACGCCTCCGGGACGaggagg                                                               >  2:364375/1‑143 (MQ=255)
                                                                            tAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGCCGTggcggc                                                              >  1:1052634/1‑143 (MQ=255)
                                                                            tAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCAGGACGCggcggc                                                              >  2:739968/1‑143 (MQ=255)
                                                                              gaaaaaaggCGGTCAACTGACCGCCTTTTTTATATTCAAAAAATGGATTAGCTCCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGt                                                            >  1:878135/8‑143 (MQ=255)
                                                                              aaaTAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGAGCTGGCGGCGt                                                            >  1:1033256/1‑143 (MQ=255)
                                                                               cattaGGGCTGTCAGGTGCCCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGTAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGtt                                                           <  2:1143599/139‑1 (MQ=255)
                                                                                aTAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGCCGTGGCGGCGTTg                                                          >  2:186216/1‑143 (MQ=255)
                                                                                 tAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTgg                                                         <  2:222912/143‑1 (MQ=255)
                                                                                 tAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCATAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTgg                                                         <  2:406448/143‑1 (MQ=255)
                                                                                     ggCGGGCAGTTCACCGCCTCTTTTCTTTGCGTAGGCCGGATAAGCACCGCGCATCCGCCACACACTGCAACGGGAACATCCTTAGCGCTAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATc                                                     <  2:452626/143‑1 (MQ=255)
                                                                                      gCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGCACATCATGAGCGATAATGACAGTACCGTAGCCCAGGCCCCGCCTCCGGGCCGTAGCGCCGTTGACATcc                                                    >  2:318540/1‑143 (MQ=255)
                                                                                        gggcAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTg                                                  <  2:1199571/140‑1 (MQ=255)
                                                                                        ggTCAGTTGCCCGCTCTTGTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTg                                                  <  2:647844/143‑1 (MQ=255)
                                                                                         gTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTgc                                                 <  2:599364/143‑1 (MQ=255)
                                                                                          tCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTgcg                                                >  1:1110515/1‑143 (MQ=255)
                                                                                              ttGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCAtc                                            >  2:1019785/1‑143 (MQ=255)
                                                                                                 gccGCCTTTGTGCTGTTCGGAGGGCGGAGAAGCCCCGCGCAGCCGCCACACCAGGCGACAGGAACATCATGGGCGATAAGGGCCCCACGGTAGCCCAGGCCACGCCGCCGGGACGTGGCGGCGTTGGCATCCGGCGCATCTcc                                         <  2:154932/142‑1 (MQ=255)
                                                                                                    gCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCAGGACGTGCCGGCGTTGGCATCCTGCGCATCTCCGGc                                      >  2:59747/1‑143 (MQ=255)
                                                                                                    gCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCAGCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGc                                      <  2:74258/143‑1 (MQ=255)
                                                                                                      cTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCatccgccctacgaaaagaaaaaaggtggtcaactgaccgcccttattttagcgaaaactcaccgaatcaggatttttt                                                                  <  2:85955‑M2/113‑79 (MQ=255)
                                                                                                      cTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCatccgccctacgaaaagaaaaaaggcggtcaactgaccgcccttattttagcgaaaactcaccgaatcaggatttttt                                                                  >  1:85955‑M2/1‑35 (MQ=255)
                                                                                                      cTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAGCAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCtt                                    <  2:691355/143‑1 (MQ=255)
                                                                                                          tttcttttcGTAGGGCGGATAAGCACCGCGCGTACGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCaaa                                <  1:1206325/143‑1 (MQ=255)
                                                                                                          tctcttttcGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCaaa                                <  1:838582/141‑1 (MQ=255)
                                                                                                           ttcttttcGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCATTCGCATCCTGCGCATCTCCGGCTTCAAAg                               <  2:157284/143‑1 (MQ=255)
                                                                                                              ttttcGTAGGGCGGATAAGCACCGCGCatccgccctacgaaaagaaaaaaggcggtcaactgaccgcccttattttagcgaaaactcaccgcatcaggattttttcttctcgcggctatgcaggccacgtttttccagaccac                            <  1:1067876‑M2/143‑117 (MQ=255)
                                                                                                               tttcGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCg                           <  1:1160609/143‑1 (MQ=255)
                                                                                                                ttcGTAGGGCGGATAAGCACCGCGCatccgccctacgaaaagaaaaaaggcggtcaactgaccgcccttattttagcgaaaactcaccgcatcaggattttttcttctcgcgactatgcaggccacgcgccaccagaccacgg                          <  2:440936‑M2/143‑119 (MQ=255)
                                                                                                                   ggaGGGCGGATAAGCACCGCGCGTCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCGTGaa                       <  2:739996/141‑1 (MQ=255)
                                                                                                                    tAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCGTGAAg                      >  1:685148/1‑143 (MQ=255)
                                                                                                                      gggCGGATAAGCACCGCGCatccgccctacgaaaagaaaaaaggcggtcaactgaccgcccttattttagcgaaaactcaccgcatcaggactttttcttctcgcggctacgcaggccacgttgtgccagcccacggtaaatc                    <  2:922068‑M2/143‑125 (MQ=255)
                                                                                                                       ggCGGATAAGCACCGCGCatccgccctacgaaaagaaaaaaggcggtcaactgaccgcccttattttagcgaaaactcaccgaatcaggattttttcttctcgcggctatgcaggccacgtttttccagaccacggtaaatca                   <  1:735343‑M2/143‑126 (MQ=255)
                                                                                                                       ggCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTCAAAAGCCCGTGAAGTTg                   >  2:1056668/1‑143 (MQ=255)
                                                                                                                        gCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGATTCAACGCTCGTGAAGTTGc                  >  1:469455/1‑143 (MQ=255)
                                                                                                                           gATACGCACCGCGCACCCGTCACACAAAGCAACAGGAACATCGTGAGCGATAATGACACGATCGTAGCCCAGGCCACGCCTCCGGGAGGTGGCGGCGCTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCGTGAAGTTGCCGa               <  2:214787/143‑1 (MQ=255)
                                                                                                                                gCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTAGCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCGTGAAGCTGCCGCAACCg          >  2:1025417/1‑143 (MQ=255)
                                                                                                                                   ccGGGCACCCGCCACACAAAGCGAGAGGAACATCATGAGCGATAATGACGCTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCGTGAAGTTGCCGAAACCGTGc       <  2:913015/143‑1 (MQ=255)
                                                                                                                                     gcgcATCCGCCACAGAAAGCAACAGGAACATCAGGAGCGATAACGACACTATCGTAGCCCAGGCTACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCGTGAAGTTGCCGAAACCGTGCTg     <  2:1033256/143‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                              
CTGATTTACCGTGGTCTGGAAAAACGTGGCCTGCATAGCCGCGAGAAGAAAAAATCCTGATTCGGTGAGTTTTCGCTAAAATAAGGGCGGTCAGTTGACCGCCTTTTTTCTTTTCGTAGGGCGGATAAGCACCGCGCATCCGCCACACAAAGCAACAGGAACATCATGAGCGATAATGACACTATCGTAGCCCAGGCCACGCCTCCGGGACGTGGCGGCGTTGGCATCCTGCGCATCTCCGGCTTCAAAGCCCGTGAAGTTGCCGAAACCGTGCTGGGT  >  NC_000913/3886663‑3886941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.