New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2235628	35 (0.530)	4 (0.060)	3/252	NT	9.8%	coding (364/1236 nt)	preA	NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA
	?	NC_000913	= 2235642	40 (0.630)					coding (378/1236 nt)	preA	NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA

GATTGCTGAACATCCGTTGGAAGAGAATCTGGCCGCCCTGCGTCGGCTGAAGGAAGATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGAGCTGGTAGAAAAATATTGTCGGGCAGTGAAACGGGGTTCCACGCTGCCAATGCTGGCG  >  NC_000913/2235501‑2235783                                                                                                                                              |                                                                                                                                              gATTGCTGAACATCCGTTGGAAGAGAATCTGGCCGCCCTGCGTCGGCTGAAGGAAGATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTg                                                                                                                                              >  1:801920‑M2/1‑142 (MQ=255)        gAACATCCGTTGGAAGAGAATCTGGCCGCCCTGCGTCGGCTGAAGGAAGATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGa                                                                                                                                       >  2:836999/1‑143 (MQ=255)            aTCCGTTGGAAGAGAATCTGGCCGCCCTGCGTCGGCTGAAGGAAGATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATg                                                                                                                                   >  1:1049250/1‑143 (MQ=255)                  tGGAAGAGAATCTGGCCGCCCTGCGTCGGCTGAAGGAAGATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAg                                                                                                                             <  1:685481/143‑1 (MQ=255)                        agaATCTGGCCGCCCTGCGTCGGCTGAAGGAAGATCACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAAc                                                                                                                       <  1:1137733/143‑1 (MQ=255)                            tCTGGCCGGCCTGCGTCGGCTGAAGGAAGATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTtct                                                                                                                   <  2:614290/143‑1 (MQ=255)                                   gccCTGCGTCGGCTGAAGGAAGGTTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTcc                                                                                                            <  2:798614/143‑1 (MQ=255)                                    ccccgtgTCGGCTGAAGGTAGATTAACCTGACTAAGTATTGATTGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCg                                                                                                           <  1:69443/137‑1 (MQ=255)                                       tGCGTCGGCTGAAGGAAGATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCaa                                                                                                        >  1:623770/1‑143 (MQ=255)                                              gCTGAAGGAAGATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACtt                                                                                                 >  1:1196125/1‑143 (MQ=255)                                              gCTGAAGGAAGATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACtt                                                                                                 >  1:1196328/1‑143 (MQ=255)                                                tacaggaagATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTtct                                                                                               <  1:312739/140‑1 (MQ=255)                                                tGAAGGAATATTACCCGGACAAAGTATTGATCGCGTCGATCATGGGGGAAAATGAGCAGCAATGGGAGCAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTtct                                                                                               <  1:314326/143‑1 (MQ=255)                                                    ggaagATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATg                                                                                           >  1:899257/1‑143 (MQ=255)                                                    ggaagATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATg                                                                                           <  1:836999/143‑1 (MQ=255)                                                     gaagATTACCCGGACAAAGTATTGATCGCTTCGATGATGGGGGAAAAGGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTAGCGCGGATATGATCAAGTGTCACTTCTCCTGTCCGCCACGGACTTCTCATGc                                                                                          >  2:1250996/1‑143 (MQ=255)                                                               cGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTCGc                                                                                >  2:38241/1‑143 (MQ=255)                                                                ggACAAAGTATTGATCGCTTCGAGCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCg                                                                               <  1:745705/143‑1 (MQ=255)                                                                   cAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATg                                                                            >  1:115563/1‑143 (MQ=255)                                                                   cAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATg                                                                            >  1:435764/1‑143 (MQ=255)                                                                     aaGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACGTCTCCTGTGCGCAAATGACTTCTCAGGCGAGGGGAAGCGATggc                                                                          >  1:172397/1‑141 (MQ=255)                                                                        tATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCggg                                                                       <  1:752547/143‑1 (MQ=255)                                                                         aTTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTCGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTCGCGATGTCGGGc                                                                      >  1:1250678/1‑143 (MQ=255)                                                                              tCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCATGTCGGCAAATGCCTTCTCATACGATGGGTAGCGATGTCGGGCAAAGc                                                                 >  2:1102847/1‑143 (MQ=255)                                                                                 cTTCGAGCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGGGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCg                                                              <  1:936929/143‑1 (MQ=255)                                                                                      aTCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCACGAAGCTGGCGCGGATATGATCGGGTGTAACTTCTCCTGTCCGCAAAGGACTTCTCATGCGAGGGGTCGCGCTGTCGGACAAGCCCCGgcgcc                                                         >  2:124981/1‑142 (MQ=255)                                                                                         aTGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCACATGACTTCTCATGCGATGGGTAGCGATGTGGGACACAGCCCGGAGCAGGt                                                      >  2:607826/1‑143 (MQ=255)                                                                                           gggggAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGCGCTGGTAg                                                    >  2:559817/1‑143 (MQ=255)                                                                                            ggggAAAATGAGCATCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGCGCTGGTAGa                                                   >  2:277934/1‑143 (MQ=255)                                                                                             gggAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCACATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGGGCTGGGAGaa                                                  >  2:858860/1‑143 (MQ=255)                                                                                             gggAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGAGCTGGTAGaa                                                  >  2:351632/1‑143 (MQ=255)                                                                                             gggAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGAAGGGTAGCGATGTCGGGCAAAGCACGGGGCTGGTAGaa                                                  >  1:1099965/1‑143 (MQ=255)                                                                                                     gAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGAGCTGGGAGAAAAATATTg                                          >  2:543397/1‑143 (MQ=255)                                                                                                             aTGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGAGCTGGTAGAAAAATATTGTCGGGCAg                                  >  2:482480/1‑143 (MQ=255)                                                                                                                 gaggagCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGAGCTGGTAGAAAAATATCGTCGGGCAGTGaa                              >  2:149079/1‑143 (MQ=255)                                                                                                                        tGGCGCGCCTGGTGCAAGAAGCTggcgcgccagctcctcccattgctgctcattttcccccatgatcgaagcgatcaatactttgtccgggtaatcttccttcagccgacgcagggcggccagattctcttcccacggatgtt                       <  1:1188801‑M2/143‑121 (MQ=255)                                                                                                                        tGGCGCGCCTGGTGCAAGAAGCTggcgcgccagctcctcccattgctgctcattttcccccatgatcgaagcgatcaatactttgtccgggtaatcttccttcagccgacgcagggcggccagattctcttccaacggatgtt                       <  1:733288‑M2/143‑121 (MQ=255)                                                                                                                          gcgcgcCTGGTGCAAGAAGCTggcgcgccagctcctcccattgctgctcattttcccccatgatcgaagcgatcaatactttgtccgg                                                                            >  2:141281‑M2/1‑21 (MQ=255)                                                                                                                          gcgcgcCTGGTGCAAGAAGCTggcgcgccagctcctcccattgctgctcattttcccccatgatcgaagcgatcaatactttgtccgg                                                                            <  1:141281‑M2/88‑68 (MQ=255)                                                                                                                            gcgcCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGAGCTGGTAGAAAAATATTGTCGGGCAGTGAAGCGGGGTTCCa                   >  1:82877/1‑143 (MQ=255)                                                                                                                              gcCTGGTGCAAGCAGCTGGCGCGGATATGATCGAGCGTAACTTCTCCTGTCCGCGACTGACTGCGCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGAGCTGGTAGACAAATATTGTCGGGCAGTGAAACGGGGTTCCACg                 <  2:232307/143‑1 (MQ=255)                                                                                                                                 tGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGAGCTGGTAGAAAAATATTGTCGGGCAGTGAAACGGGGTTCCACGCTg              <  2:623770/143‑1 (MQ=255)                                                                                                                                   gTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCAGGCGATGGGTAGCGATGTCGGGCAAAGCCCGGAGCTGGTAGAAAAATAGTGTCGGGCAGTGAAACGGGGTTCCACGCTGcc            >  2:207556/1‑143 (MQ=255)                                                                                                                                      cAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGCGCTGGTAGAAAAATATTGTCGGGCAGTGAAACGGGGTTCCACGCTGCCaag         >  2:786440/1‑142 (MQ=255)                                                                                                                                      cAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGAGGGGTAGCGATGTCGGGCAAAGCGCGGAGCTGGTAGAAAAATAGTGTCGGGCAGTGAAACGGGGTTACACGCTGCCatt         >  1:724542/1‑141 (MQ=255)                                                                                                                                        agaagCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGAGCTGGTAGAAAAATATTGTCGGGCAGTGAAACGGGGTTCCACGCTGCCAATGc       >  1:1166876/1‑143 (MQ=255)                                                                                                                                             cTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGCTGGGTAGCGATGTCGGGCAAAGCCCGGAGCTGGTAGAAAAATATTGTCGGGCAGTGAAACGGGGTTCCACGCTGCCAATGCTGGCg  >  1:1169128/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                              GATTGCTGAACATCCGTTGGAAGAGAATCTGGCCGCCCTGCGTCGGCTGAAGGAAGATTACCCGGACAAAGTATTGATCGCTTCGATCATGGGGGAAAATGAGCAGCAATGGGAGGAGCTGGCGCGCCTGGTGCAAGAAGCTGGCGCGGATATGATCGAGTGTAACTTCTCCTGTCCGCAAATGACTTCTCATGCGATGGGTAGCGATGTCGGGCAAAGCCCGGAGCTGGTAGAAAAATATTGTCGGGCAGTGAAACGGGGTTCCACGCTGCCAATGCTGGCG  >  NC_000913/2235501‑2235783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.