New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1231303	43 (0.950)	3 (0.070)	3/250	NT	7.1%	coding (118/1269 nt)	umuC	DNA polymerase V catalytic protein
	?	NC_000913	= 1231337	38 (0.880)					coding (152/1269 nt)	umuC	DNA polymerase V catalytic protein

CCACGTCGTTAAGGCGATGCGCTGATGTTTGCCCTCTGTGATGTAAACGCGTTTTATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTAGCAGCAATTATGAGCTTTACGCAGACATGAGCAATCGGGTGATGTCGACG  >  NC_000913/1231162‑1231446                                                                                                                                              |                                                                                                                                                ccACGTAGTTGAGGCGGTGCGCTGATGTTTGCCCTCTGTGATGTAAACGGGGTTTATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCg                                                                                                                                                <  2:306401/143‑1 (MQ=255)     gtcgtTATGGCGATGGGCTGATGTTTGCCGTCTGTGATGTAAACGCGTTTTATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAAc                                                                                                                                            <  2:396563/143‑1 (MQ=255)          tAAGGCGATGCGCTGATGTTTGCCCTCTGTGATGTAAACGCGTTTTATGCCAGCTGTGAGACGGTGTTTCGCCCCGATTCATGGGCGGGAGCGGGGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGACACGCAGa                                                                                                                                       >  2:529587/1‑143 (MQ=255)           aaGGCGATGCGCTGATGTTTGCCCTCTGTGATGTGAACGCGTTTTATGCCAGCTGTGGGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAg                                                                                                                                      <  2:591550/143‑1 (MQ=255)            atgCGATGCGTTGATGTTTTCCCTCTGTTATGTAACCGTGTTTTATGCCAGCTGTGAGACGGTGGTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAgg                                                                                                                                     <  1:621712/141‑1 (MQ=255)              gCGATGCGCTGATGTTTGCCCTCTGTGATGTAAACGCGTTTTATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGGTGTGCTATCGAATAATGACGGTTGCATTATCGCCCGAAACGCCGAGGCa                                                                                                                                   >  2:21921/1‑143 (MQ=255)                        gATGCTGGCCATCTGGGATGTAATCGCGTTTTAGGCCAGCTGTGAGACGGTGTTTCGCCCTGATTGATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTg                                                                                                                         <  2:721658/143‑1 (MQ=255)                            tttGCCCTCTGTGATGTAAACGCGTTTTATGCCAGCTGTGAGACGGTGTTTCGCGCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGt                                                                                                                     >  1:460487/1‑143 (MQ=255)                               gtcatctGTGATGTAATCGCGTTTTATGCCAGCGGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTaa                                                                                                                  <  1:257738/139‑1 (MQ=255)                               gCCCACTGTGATGTAAACGCGTTTTATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTaa                                                                                                                  <  1:229213/143‑1 (MQ=255)                                cccTTTGTGATGTAAGCGCGTTTTATGCTAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCgaaacgccaagcgcctttgcctcagcgtttcg                                                                                                                 <  2:133106‑M1/143‑33 (MQ=255)                                cccTCTGTGATGTAAACGCGTTTTATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTCTCGAATAATGACGGTTGCGCTATCGCCCGAAACGCTGAGGCACAGGCGCCGGGCGTTaaa                                                                                                                 >  2:399623/1‑143 (MQ=255)                                 ccTCTGGTATGTAAACGCGTTTTATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTaaaa                                                                                                                <  2:852264/143‑1 (MQ=255)                                   tctGTGATGTAAACGCGTTTTATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAACCCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATg                                                                                                              >  1:802194‑M2/1‑142 (MQ=255)                                      gtgATGTACACGCGTTTTATGCCATCGGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGGGCGATCGAATAATGACGGTTGCGTTATCGCTCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATgggc                                                                                                           >  2:281187‑M2/1‑139 (MQ=255)                                         aTGTAAACGCGTTTTATGCCAGCTGTGAGACGGTGTTTCACCCTGATTTATGGGGTAAACCGGTGGTTGTGCTGTCGAATAATGACGGTTGCGTTATCGCCCGAGACGCTGAGGCAAAGGCGCTTGGCGGTAAAATgggcgat                                                                                                        <  1:315989‑M2/143‑8 (MQ=255)                                            tagacgcGTTTTATGCCAGCTGTGAGACGGTTCTTCGCCCTGATTTATGGTGTAAACCGGTGGTTGTGCTATCCAATAATTACGGTTGCGTTATCGCCCattttaacgccaagcgcctttgcctcagcgtttcgggcgataac                                                                                                     <  1:274587‑M1/140‑45 (MQ=255)                                              aaCGCGCTCTATGGCAGCTGTGCGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTg                                                                                                   <  1:322298/143‑1 (MQ=255)                                               aCGCGTTTTATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGGTAAAATGGGCGATCCCTgg                                                                                                  >  1:516567/1‑143 (MQ=255)                                                cgcgTTTTATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCattttaacgccaagcgcctttgcctcagcgtttcgggcgataacgcaa                                                                                                 <  2:248632‑M1/143‑49 (MQ=255)                                                    ttttATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTcaa                                                                                             <  1:536928/143‑1 (MQ=255)                                                     tttATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTcaaa                                                                                            <  1:679675/143‑1 (MQ=255)                                                         tgctatcTGTCAGACGGTTTTTCGTCCTGATTGAGGGGGTAAGCCGGTTGTTGTGCTATCGAATAATGGCGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTcaaacaaa                                                                                        <  1:808037/137‑1 (MQ=255)                                                           ccAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAACCaaaaa                                                                                      >  1:622451/1‑143 (MQ=255)                                                                  tgAGACGGTGTTTCGCGCGGATGTAGGGGGTGAGCCGGTGGTTGTGCTAGCGAATAATGACGGCTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGt                                                                               <  1:177237/143‑1 (MQ=255)                                                                   gagaCGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCACCCGAAACGATCAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAACAGATCTgct                                                                              >  2:529977/1‑141 (MQ=255)                                                                    agaCGGTGTTTCGCCCTGATTTATGGGGTAAATCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGATGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGttt                                                                             <  2:287220/143‑1 (MQ=255)                                                                    agaCGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGttt                                                                             >  1:253235/1‑143 (MQ=255)                                                                         gtgtTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTtcgtcg                                                                        <  1:703852/143‑1 (MQ=255)                                                                              ccGCCCCGATTTATGGGGTAACCCGGTGGTTGTGCTATCGACTAATGACACTTGCGTTACCGCCCCTAACCCTGATGCAAAGGCTCTTGGCGTTAAAATGGGCGCTCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCtgtg                                                                   <  2:58742/142‑1 (MQ=255)                                                                                 cccTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCg                                                                >  2:539048/1‑143 (MQ=255)                                                                                        ttATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTg                                                         <  1:749527/143‑1 (MQ=255)                                                                                        ttATGGGGTAAACCGGTGGTTGTGCTATCGAAT‑ATGACGGGTGCGTTATCGCCCGGAACGCTGGAGCAAAGGCGATTGGCGTTAAAATGGGCGATTCCTGGTTCAAACAAAAAGAACTGATTCGTCGCTGTGGGGGGGTTTGc                                                        >  2:458938/1‑143 (MQ=255)                                                                                         tATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGc                                                        >  1:26924/1‑143 (MQ=255)                                                                                               gTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTagc                                                  >  2:450435/1‑143 (MQ=255)                                                                                               gTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTagc                                                  >  1:259248/1‑143 (MQ=255)                                                                                                tAAATCGGTGGTTGTGCTATCGAATAATGGCGGTTGCGTTGTCGCCCGAAACACTGAGGCAAAGGCGCGTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTagca                                                 <  1:369387/143‑1 (MQ=255)                                                                                                       gtggtTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGACACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACCAAAAGCTCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTAGCAGCaagtc                                          >  2:642265/1‑140 (MQ=255)                                                                                                           ttGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTAGCAGCAATTATGAg                                      <  1:237588/143‑1 (MQ=255)                                                                                                           ttGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTAGCAGCAATTATGAg                                      <  1:333297/143‑1 (MQ=255)                                                                                                              tgCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGGCGCTGTGGCGTGGTTTTCTTTAGCCGCAATTATGAGCtt                                   >  1:878814/1‑143 (MQ=255)                                                                                                                 tATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTAGCAGCAATTATGAGCTTTAc                                >  1:664640/1‑143 (MQ=255)                                                                                                                   tCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTAGCAGCAATTATGAGCTTTACGc                              >  1:273592/1‑143 (MQ=255)                                                                                                                   tCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCCGTGGCGTGGTTTGATTTAGCAGCAATGATGAGCGTTACGc                              >  2:406386/1‑143 (MQ=255)                                                                                                                    cGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGACACAGACGCCTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATGTGTTTCGTCGCTGTGGCGTGGGTTGCTTTAGCAGCAATTATGAGCTTAAGGCa                             >  2:61989/1‑143 (MQ=255)                                                                                                                      aataatGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTAGCAGCAATTATGAGCTTTACGCAGa                           >  1:371653/1‑143 (MQ=255)                                                                                                                         aatGACGGTTTCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAGAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTAGCAGCAATTATGAGCTTTACGCAGACAt                        <  2:653724/143‑1 (MQ=255)                                                                                                                         aatCACGGTCGCGTTATCGCCCGAAACGCTGAGCCAAAGGCGCTTGGCGTTAAACTGGGCGATCCCTGGTTCAAACAAAAAGATCTGTCTCGTCGCTGTGGCGTGGTTTGCATTAGCAGCAATTATGAGCTTTACGCAGACAt                        <  1:177404/143‑1 (MQ=255)                                                                                                                            gACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTAGCAGCAATTATGAGCTTTACGCAGACATGAg                     <  1:529587/143‑1 (MQ=255)                                                                                                                               gggtGCGTGATCGCCCGAAACGCTGAGGCGAAGGCGCTTGGCGTTAAAATGGGCGAGCCCTGGTTCAACCAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTAGCAGCAATTATGAGCTTTACGCAGACATGAGCaa                  <  2:511636/140‑1 (MQ=255)                                                                                                                                 ttGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATgggcgataacgcaaccgtcattattcgatagcacaaccaccggtttaccccataaatcagggcgaaacaccgtctcacagctggcataaaacgcg                <  2:248632‑M2/143‑96 (MQ=255)                                                                                                                                   gCGTGATCGCTCGCAACGCTGAGGCAAAGGCGCTTGGCGTTAAAAGGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTAGCAGCAATTATGAGCTTTACGCAGACATGAGCAATCgg              <  2:257705/143‑1 (MQ=255)                                                                                                                                     gTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATgggcgataacgcaaccgtaattattggatagcacaaccaccggtttacaccataaatcagggcgaagaaccgtctcacagctggcataaaacgcgtcta            <  1:274587‑M2/143‑100 (MQ=255)                                                                                                                                        aTCGCCCattttaccgccaagcgcctttgcctcagcgtctcgggcgataacgcaaccgtcattattcgacagcacaaccaccggtttaccccataaatcagggtgaaacaccgtctcacagctggcataaaacgcgtttacat         <  1:315989‑M1/143‑137 (MQ=255)                                                                                                                                           gCCCattttaacgccaagcgcctttgcctcagcgtttcgagcgataacgcaaccgtcattattcgatcgcccaaccaccggtttaccccataaatcagggcgaaacaccgtctcaccgatggcataaaacgcgtgtacatcac      >  2:281187‑M1/1‑4 (MQ=255)                                                                                                                                              cattttaacgccaagcgcctttgcctcagcgtttcgggcgataacgcaaccgtcattattcgatagcacaaccaccgggttaccccataaatcagggcgaaacaccgtctcacagctggcataaaacgcgtttacatcacaga   >  1:802194‑M1/1‑1 (MQ=255)                                                                                                                                              cGAAACGCTGAGGCAAAGGCGCTTGGCGTTTC‑‑ggcgataacgcaaccgtcattattcgatagcacaaccaccggtttaccccataaatcagggcgaaacaccgtctcacagctagcataaaacgcgcttacatcacaaaggg  <  2:133106‑M2/143‑111 (MQ=255)                                                                                                                                              |                                                                                                                                                CCACGTCGTTAAGGCGATGCGCTGATGTTTGCCCTCTGTGATGTAAACGCGTTTTATGCCAGCTGTGAGACGGTGTTTCGCCCTGATTTATGGGGTAAACCGGTGGTTGTGCTATCGAATAATGACGGTTGCGTTATCGCCCGAAACGCTGAGGCAAAGGCGCTTGGCGTTAAAATGGGCGATCCCTGGTTCAAACAAAAAGATCTGTTTCGTCGCTGTGGCGTGGTTTGCTTTAGCAGCAATTATGAGCTTTACGCAGACATGAGCAATCGGGTGATGTCGACG  >  NC_000913/1231162‑1231446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.